Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABOX98_RS02505 Genome accession   NZ_CP158570
Coordinates   547811..548536 (-) Length   241 a.a.
NCBI ID   WP_031686344.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SRPA1308     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 542811..553536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOX98_RS02480 (ABOX98_02480) - 543283..543798 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  ABOX98_RS02485 (ABOX98_02485) rarD 544488..545384 (-) 897 WP_003103301.1 EamA family transporter RarD -
  ABOX98_RS02490 (ABOX98_02490) - 545587..546561 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  ABOX98_RS02495 (ABOX98_02495) - 546623..547381 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  ABOX98_RS02500 (ABOX98_02500) - 547449..547769 (-) 321 WP_031686343.1 YfiM family lipoprotein -
  ABOX98_RS02505 (ABOX98_02505) comF 547811..548536 (-) 726 WP_031686344.1 ComF family protein Machinery gene
  ABOX98_RS02510 (ABOX98_02510) - 548675..548968 (-) 294 WP_003084806.1 hypothetical protein -
  ABOX98_RS02515 (ABOX98_02515) - 549022..549948 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  ABOX98_RS02520 (ABOX98_02520) - 550066..550824 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  ABOX98_RS02525 (ABOX98_02525) - 550901..551149 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  ABOX98_RS02530 (ABOX98_02530) - 551160..552536 (+) 1377 WP_023092334.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  ABOX98_RS02535 (ABOX98_02535) - 552538..553416 (+) 879 WP_023100156.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26980.47 Da        Isoelectric Point: 10.5596

>NTDB_id=910225 ABOX98_RS02505 WP_031686344.1 547811..548536(-) (comF) [Pseudomonas aeruginosa strain SRPA1308]
MSFPLRPLTRWLLPPPACLLCAACSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLTRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=910225 ABOX98_RS02505 WP_031686344.1 547811..548536(-) (comF) [Pseudomonas aeruginosa strain SRPA1308]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCTGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTACCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382