Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SD437_RS08420 Genome accession   NZ_CP139565
Coordinates   1670561..1671340 (+) Length   259 a.a.
NCBI ID   WP_017417775.1    Uniprot ID   A0A411A618
Organism   Bacillus velezensis strain NCCP     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665561..1676340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS08400 trmFO 1666248..1667555 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SD437_RS08405 xerC 1667625..1668542 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  SD437_RS08410 hslV 1668558..1669103 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  SD437_RS08415 hslU 1669111..1670523 (+) 1413 WP_255247556.1 HslU--HslV peptidase ATPase subunit -
  SD437_RS08420 codY 1670561..1671340 (+) 780 WP_017417775.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SD437_RS08425 flgB 1671694..1672083 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  SD437_RS08430 flgC 1672083..1672535 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  SD437_RS08435 fliE 1672546..1672866 (+) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  SD437_RS08440 fliF 1672909..1674519 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  SD437_RS08445 fliG 1674532..1675548 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  SD437_RS08450 fliH 1675541..1676296 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29055.26 Da        Isoelectric Point: 4.6560

>NTDB_id=910214 SD437_RS08420 WP_017417775.1 1670561..1671340(+) (codY) [Bacillus velezensis strain NCCP]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQNQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=910214 SD437_RS08420 WP_017417775.1 1670561..1671340(+) (codY) [Bacillus velezensis strain NCCP]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGAATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A618

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.842

100

0.988
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471