Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SD440_RS08635 Genome accession   NZ_CP139561
Coordinates   1669033..1669812 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain NCCP     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1664033..1674812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS08615 trmFO 1664737..1666041 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SD440_RS08620 xerC 1666104..1667021 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  SD440_RS08625 hslV 1667036..1667581 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  SD440_RS08630 hslU 1667598..1668998 (+) 1401 WP_039166692.1 HslU--HslV peptidase ATPase subunit -
  SD440_RS08635 codY 1669033..1669812 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SD440_RS08640 flgB 1670101..1670490 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  SD440_RS08645 flgC 1670490..1670942 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  SD440_RS08650 fliE 1670954..1671271 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  SD440_RS08655 fliF 1671322..1672913 (+) 1592 Protein_1656 flagellar basal-body MS-ring/collar protein FliF -
  SD440_RS08660 fliG 1672925..1673941 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  SD440_RS08665 fliH 1673934..1674698 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=910147 SD440_RS08635 WP_007499612.1 1669033..1669812(+) (codY) [Bacillus altitudinis strain NCCP]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=910147 SD440_RS08635 WP_007499612.1 1669033..1669812(+) (codY) [Bacillus altitudinis strain NCCP]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471