Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABS957_RS28420 Genome accession   NZ_CP158482
Coordinates   5934132..5934557 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 1485138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5929132..5939557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS957_RS28405 (ABS957_28405) pilX 5929696..5930283 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  ABS957_RS28410 (ABS957_28410) pilY1 5930295..5933786 (+) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -
  ABS957_RS28415 (ABS957_28415) pilY2 5933788..5934135 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  ABS957_RS28420 (ABS957_28420) comF 5934132..5934557 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  ABS957_RS28425 (ABS957_28425) ispH 5934604..5935548 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABS957_RS28430 (ABS957_28430) fkpB 5935634..5936074 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ABS957_RS28435 (ABS957_28435) lspA 5936067..5936576 (-) 510 WP_003102615.1 signal peptidase II -
  ABS957_RS28440 (ABS957_28440) ileS 5936569..5939400 (-) 2832 WP_004352756.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=910022 ABS957_RS28420 WP_003094721.1 5934132..5934557(+) (comF) [Pseudomonas aeruginosa strain 1485138]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=910022 ABS957_RS28420 WP_003094721.1 5934132..5934557(+) (comF) [Pseudomonas aeruginosa strain 1485138]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383