Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SNE23_RS22290 Genome accession   NZ_CP139483
Coordinates   4290100..4292439 (-) Length   779 a.a.
NCBI ID   WP_157409080.1    Uniprot ID   A0AAU0QT22
Organism   Bacillus sp. RA(2023)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4285100..4297439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNE23_RS22260 (SNE23_22260) - 4285570..4285746 (-) 177 WP_167519249.1 hypothetical protein -
  SNE23_RS22265 (SNE23_22265) - 4285832..4286023 (-) 192 WP_048531370.1 hypothetical protein -
  SNE23_RS22270 (SNE23_22270) - 4286100..4286421 (-) 322 Protein_4336 DUF2568 domain-containing protein -
  SNE23_RS22275 (SNE23_22275) - 4286688..4287128 (-) 441 WP_071757225.1 D-tyrosyl-tRNA(Tyr) deacylase -
  SNE23_RS22280 (SNE23_22280) relA 4287146..4289329 (-) 2184 WP_001262809.1 GTP diphosphokinase -
  SNE23_RS22285 (SNE23_22285) - 4289540..4290052 (-) 513 WP_000346214.1 adenine phosphoribosyltransferase -
  SNE23_RS22290 (SNE23_22290) recJ 4290100..4292439 (-) 2340 WP_157409080.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SNE23_RS22295 (SNE23_22295) - 4292541..4293434 (-) 894 WP_048531376.1 cation diffusion facilitator family transporter -
  SNE23_RS22300 (SNE23_22300) secDF 4293588..4295852 (-) 2265 WP_048531378.1 protein translocase subunit SecDF -
  SNE23_RS22305 (SNE23_22305) - 4296123..4296407 (-) 285 WP_048531380.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88127.65 Da        Isoelectric Point: 4.8968

>NTDB_id=910009 SNE23_RS22290 WP_157409080.1 4290100..4292439(-) (recJ) [Bacillus sp. RA(2023)]
MLQPKTRWKEKEYNGERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITSVDVFCKAEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEVNVAELPKEKIKMVYFSEEVLNKFSLEDYKEYMMHASEVTQLDDQYVVFLDLPKGTDELRE
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKAPFSLRQYGAQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=910009 SNE23_RS22290 WP_157409080.1 4290100..4292439(-) (recJ) [Bacillus sp. RA(2023)]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGGCGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGATTAGATACAGAAGATAAAATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATCGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCCGATGGAGTAAGTAGTACGACTGTGTTATATCTTGCCTTGCAAGAATT
AGGTGCAGACGTAGAATTTTATATTCCAAACCGTTTTACAGAAGGTTATGGACCAAATGAAGAAGCATTTCGCTGGGCGC
ATAGCGCAGGATTCTCACTAATTATTACTGTCGATACTGGTATCGCAGCAGTACATGAAGCGAAGGTAGCGAAGGAACTT
GGGATAGATCTTATTATTACGGATCACCATGAGCCACCACCAGAATTGCCAGAAGCACTTGCGATTATTCACCCGAAATT
AGATGGCGGTGTATATCCGTTTCACTATTTAGCGGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCATTATTAGGTCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACGGTTGCCGATTTAGTATCACTTCACGGTGAAAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGCATGACGAAAAATATTGGACTAAAGGCGTTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACCGAAGAGAGTATTGGTTTCTCAATCGCACCTCGTATTAATGCTGTTGGACGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGAGGATCCAGAAGAAGCGAAAGAGCTGGCTGAAGAAATTGATGAGTTGAACAAATTA
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAAAATAATTTCCCGCCAGAAGACAATAAAGT
ATTAGTGCTTGCAAAAGAAGGATGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CGACGATTGTATTAAGCATTGATCCTGTCAAGGAAACGGCAAAAGGTTCAGCACGTAGTATTGCGGGATTTGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGGCATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGCCGCTTAAATGAACAAGCAGATACAATTTTAACGGAAGAAGATTTTATTCCGATTACAT
CAGTTGATGTCTTTTGTAAGGCGGAGGATGTAACACTTGCAGCAATAGAAGATATGCAAAAGTTAGCACCATTTGGTGTT
GGAAATCCAAAACCGCGTATTGCAGTGAAGGATGCAGAGCTAGAAAGTATTCGAGCAATCGGATCCGACGGTTCTCATTT
GAAAATGGCTCTTCGTGATGGACAAGCAACACTGGATACAATCGGATTTGGTTTTGGTGCGTATGCGAAAGAAATTTCTC
CAGTTGCAAAGGTATCTGTAATAGGGGAAGCATCTATCAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTACAA
GATATTGCTGTAGAGGCGTGGCAACTATTTGATTGGCGTAGCATGCGTAACGTAGAAGTGAATGTAGCAGAACTTCCAAA
AGAAAAGATAAAAATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGAGTATATGATGC
ATGCATCAGAAGTTACGCAGTTAGATGATCAATACGTCGTGTTCCTTGATTTACCAAAAGGAACAGATGAATTACGAGAG
CTATTTAAAGTTGGGTTCCCATCGCGAATTTATACACTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGAGAACACTTTAAATGGTACTATTCTTTCTTGAGCCAAAAAGCACCATTTTCTTTAAGACAATATGGAGCGCAACTAT
GCCAACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.842

99.358

0.525