Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SNE23_RS19385 Genome accession   NZ_CP139483
Coordinates   3758722..3759501 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus sp. RA(2023)     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3753722..3764501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNE23_RS19360 (SNE23_19360) uppS 3754468..3755244 (-) 777 WP_048530497.1 isoprenyl transferase -
  SNE23_RS19365 (SNE23_19365) frr 3755330..3755887 (-) 558 WP_000531501.1 ribosome recycling factor -
  SNE23_RS19370 (SNE23_19370) pyrH 3755890..3756612 (-) 723 WP_000042663.1 UMP kinase -
  SNE23_RS19375 (SNE23_19375) tsf 3756679..3757566 (-) 888 WP_002194822.1 translation elongation factor Ts -
  SNE23_RS19380 (SNE23_19380) rpsB 3757670..3758371 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  SNE23_RS19385 (SNE23_19385) codY 3758722..3759501 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SNE23_RS19390 (SNE23_19390) hslU 3759579..3760970 (-) 1392 WP_048530499.1 ATP-dependent protease ATPase subunit HslU -
  SNE23_RS19395 (SNE23_19395) hslV 3760993..3761535 (-) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  SNE23_RS19400 (SNE23_19400) xerC 3761579..3762478 (-) 900 WP_321529479.1 tyrosine recombinase XerC -
  SNE23_RS19405 (SNE23_19405) trmFO 3762544..3763848 (-) 1305 WP_071716250.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=910000 SNE23_RS19385 WP_000421288.1 3758722..3759501(-) (codY) [Bacillus sp. RA(2023)]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=910000 SNE23_RS19385 WP_000421288.1 3758722..3759501(-) (codY) [Bacillus sp. RA(2023)]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGGATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459