Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SOJ49_RS01075 Genome accession   NZ_CP139482
Coordinates   226427..227530 (+) Length   367 a.a.
NCBI ID   WP_369856376.1    Uniprot ID   -
Organism   Candidatus Thalassolituus haligoni strain BB40     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 221427..232530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOJ49_RS01065 - 222279..223685 (+) 1407 WP_369856374.1 FAD-binding oxidoreductase -
  SOJ49_RS01070 - 223783..226305 (-) 2523 WP_369856375.1 penicillin-binding protein 1A -
  SOJ49_RS01075 pilM 226427..227530 (+) 1104 WP_369856376.1 pilus assembly protein PilM Machinery gene
  SOJ49_RS01080 - 227530..228081 (+) 552 WP_369856377.1 PilN domain-containing protein -
  SOJ49_RS01085 - 228083..228718 (+) 636 WP_369856378.1 type 4a pilus biogenesis protein PilO -
  SOJ49_RS01090 - 228708..229256 (+) 549 WP_369856379.1 pilus assembly protein PilP -
  SOJ49_RS01095 pilQ 229258..231357 (+) 2100 WP_369856380.1 type IV pilus secretin PilQ -
  SOJ49_RS01100 aroK 231361..231882 (+) 522 WP_369856381.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39882.02 Da        Isoelectric Point: 4.2189

>NTDB_id=909949 SOJ49_RS01075 WP_369856376.1 226427..227530(+) (pilM) [Candidatus Thalassolituus haligoni strain BB40]
MLSQVLDFQGDFVVLANLFGKKGKALLGVDISSTSVKVLELSRSDSGYRVEAYAAETLPAGAIVEQNIHNDEEVGEAIKR
ALTKSRSGAKRAALAVAGSSVITKIIQMSANLSEAEMDLQIRAEADQYIPYPLEEVSLDWEVQQGLAGNDEIAQVLLAAC
RSDTVERRKDAVEYADLEAVVVDIEAYCTERAFELIRDHLEGDTNEAVAIIDIGATMTTLSVLHNGVSIYTREQLFGGRQ
LVDDIMRRYSMSEPEAAAARDGDGLPSDYEEELLEPFRNAVVQQISRSLQFFFSSSQFNEVDCLVLAGGTASLTGLVEKV
QDDMGLPTLVANPFRDMAVSSRVNVKLLSNDAPSLLVACGLAMRSFN

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=909949 SOJ49_RS01075 WP_369856376.1 226427..227530(+) (pilM) [Candidatus Thalassolituus haligoni strain BB40]
TTGTTATCGCAAGTTCTCGATTTTCAAGGGGATTTTGTTGTGCTGGCGAACCTGTTTGGCAAGAAGGGCAAGGCCCTTCT
TGGCGTGGACATCAGCTCCACGTCGGTAAAGGTCCTTGAATTGAGTCGTAGCGATTCCGGATATCGGGTAGAAGCCTACG
CTGCTGAAACACTGCCTGCGGGAGCTATTGTGGAACAGAATATCCACAATGACGAAGAAGTAGGCGAAGCGATCAAGCGA
GCATTAACCAAATCCCGCTCGGGTGCGAAACGTGCTGCCCTGGCGGTGGCCGGTTCTTCTGTTATTACCAAAATCATTCA
GATGAGTGCCAATCTGTCAGAAGCCGAAATGGATTTGCAGATCCGTGCCGAGGCTGATCAATATATTCCCTATCCATTAG
AAGAGGTGTCGCTGGACTGGGAAGTGCAGCAAGGCCTGGCGGGTAATGATGAAATTGCTCAGGTATTACTGGCCGCCTGT
CGTTCGGACACCGTTGAACGCCGCAAGGATGCTGTTGAATACGCGGATCTTGAAGCTGTAGTGGTTGATATTGAAGCTTA
TTGTACTGAGCGGGCGTTTGAGCTTATTCGTGATCATCTGGAAGGTGACACCAATGAGGCTGTCGCAATTATCGATATTG
GTGCGACCATGACCACGCTCAGTGTGCTTCATAATGGTGTATCTATATATACCCGCGAGCAGCTTTTTGGCGGTCGTCAG
TTGGTTGACGACATCATGCGACGTTACAGTATGTCTGAACCGGAAGCGGCAGCAGCACGCGACGGTGATGGCCTGCCGAG
TGATTATGAAGAAGAGCTGCTGGAGCCGTTTCGGAATGCGGTTGTTCAGCAAATCAGTCGTTCATTACAGTTTTTCTTTT
CCTCCAGTCAGTTTAATGAAGTGGATTGCCTTGTATTGGCGGGTGGCACTGCATCGCTGACTGGGCTGGTGGAAAAGGTG
CAGGATGACATGGGATTGCCAACACTGGTCGCCAACCCATTTCGGGATATGGCTGTGTCGTCCAGGGTGAATGTCAAGTT
ACTGAGTAACGATGCGCCCTCATTGCTGGTGGCGTGTGGATTGGCGATGCGGAGTTTTAACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(28-366)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.429

95.368

0.49
  comM Acinetobacter nosocomialis M2

51.429

95.368

0.49
  comM Acinetobacter baylyi ADP1

48.571

95.368

0.463
  pilM Legionella pneumophila strain ERS1305867

41.595

95.64

0.398