Detailed information NTG0909863

Bioinformatically predicted

Overview

• Name: rcrP
• Type: Regulator
• Locus tag: SQ960_RS09430
• Genome accession: NZ_CP139452
• Coordinates: 2168932..2170803 (-)
• Length: 623 a.a.
• NCBI ID: WP_013141460.1
• Uniprot ID: A0A7U4Z647
• Organism: Bifidobacterium longum strain 2021S6-1
• Function: regulate competence (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2170990..2198120	2168932..2170803	flank	187

Gene organization within MGE regions

Location: 2168932..2198120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SQ960_RS09430	rcrP	2168932..2170803 (-)	1872	WP_013141460.1	ABC transporter ATP-binding protein	Regulator
SQ960_RS09435	-	2170990..2171511 (-)	522	WP_007052942.1	MarR family winged helix-turn-helix transcriptional regulator	-
SQ960_RS09440	-	2171873..2172436 (+)	564	WP_007055052.1	BRO family protein	-
SQ960_RS09445	-	2172932..2176036 (-)	3105	WP_371818283.1	bacterial Ig-like domain-containing protein	-
SQ960_RS09450	-	2176341..2176406 (-)	66	WP_349816200.1	hypothetical protein	-
SQ960_RS09455	-	2176980..2181521 (-)	4542	WP_013141463.1	exo-beta-1,6-galactobiohydrolase	-
SQ960_RS09460	-	2181825..2183321 (-)	1497	WP_013141464.1	RNA-binding domain-containing protein	-
SQ960_RS09465	-	2183661..2185184 (-)	1524	WP_013141465.1	amino acid permease	-
SQ960_RS09470	-	2185510..2186715 (-)	1206	WP_013141466.1	ROK family transcriptional regulator	-
SQ960_RS09475	-	2186907..2187907 (-)	1001	Protein_1834	IS3 family transposase	-
SQ960_RS09480	istA	2188059..2189369 (+)	1311	WP_080515312.1	IS21 family transposase	-
SQ960_RS09485	istB	2189369..2190139 (+)	771	WP_038426051.1	IS21-like element helper ATPase IstB	-
SQ960_RS09490	-	2190693..2193722 (-)	3030	WP_013141467.1	glycoside hydrolase family 38 C-terminal domain-containing protein	-
SQ960_RS09495	-	2193779..2194663 (-)	885	WP_038426053.1	carbohydrate ABC transporter permease	-
SQ960_RS09500	-	2194656..2195531 (-)	876	WP_013141468.1	carbohydrate ABC transporter permease	-
SQ960_RS09505	-	2195630..2196994 (-)	1365	WP_013141469.1	extracellular solute-binding protein	-
SQ960_RS09510	-	2197160..2197393 (-)	234	WP_013141470.1	transposase	-
SQ960_RS09515	-	2197413..2197676 (-)	264	WP_230473965.1	IS3 family transposase	-
SQ960_RS09520	-	2197827..2198120 (-)	294	WP_013141471.1	IS3 family transposase	-

Sequence

Protein

• Length: 623 a.a.
• Molecular weight: 67927.42 Da
• Isoelectric Point: 5.1908

>NTDB_id=909863 SQ960_RS09430 WP_013141460.1 2168932..2170803(-) (rcrP) [Bifidobacterium longum strain 2021S6-1]
MFRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQDAKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVKNGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGEAAEGADIPA
EQLNRVKAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide

• Length: 1872 bp

>NTDB_id=909863 SQ960_RS09430 WP_013141460.1 2168932..2170803(-) (rcrP) [Bifidobacterium longum strain 2021S6-1]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGTGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAGATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGTTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAGTTCAAGGCGATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGACGCCAAATTCACCAAGGCCAACAAGGACCTCACCGAGACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGTTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCTTACCTCATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACCGAG
CCGATCGTCAAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCGAGGCCGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

• ABC transporter transmembrane region (ABC_membrane) (54-292)

• ABC transporter (ABC_tran) (359-543)

3D structure

• AlphaFold DB: A0A7U4Z647

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rcrP	Streptococcus mutans UA159	48.815	100	0.496