Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SQ965_RS01120 Genome accession   NZ_CP139450
Coordinates   269706..271625 (+) Length   639 a.a.
NCBI ID   WP_004218470.1    Uniprot ID   -
Organism   Bifidobacterium animalis strain 20224-6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 264706..276625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SQ965_RS01095 - 265609..265854 (-) 246 WP_004218464.1 FtsX-like permease family protein -
  SQ965_RS01100 - 265851..266288 (-) 438 WP_004218465.1 ABC transporter permease -
  SQ965_RS01105 - 266206..267927 (-) 1722 WP_004218467.1 ABC transporter permease -
  SQ965_RS01110 - 267924..268737 (-) 814 Protein_210 ABC transporter ATP-binding protein -
  SQ965_RS01115 - 269041..269634 (+) 594 WP_004218469.1 MarR family winged helix-turn-helix transcriptional regulator -
  SQ965_RS01120 rcrP 269706..271625 (+) 1920 WP_004218470.1 ABC transporter ATP-binding protein Regulator
  SQ965_RS01125 rcrQ 271697..273532 (+) 1836 WP_004218471.1 ABC transporter ATP-binding protein Regulator
  SQ965_RS01130 - 273546..275072 (-) 1527 WP_004218472.1 polysaccharide deacetylase family protein -
  SQ965_RS01135 - 275447..276136 (-) 690 WP_004218473.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 639 a.a.        Molecular weight: 70845.69 Da        Isoelectric Point: 5.0237

>NTDB_id=909852 SQ965_RS01120 WP_004218470.1 269706..271625(+) (rcrP) [Bifidobacterium animalis strain 20224-6]
MIRIMKYLSKTEIGQLVLSLVTIVGQVYFDLELPSYMSQITRLVETPGSQMRDIWIAGGKMLLVSLGSLACAVITGYFAA
RVAASFGQRLRSLEFRKVESFGPSEMHRFSTASLITRSTNDITQIQMFITMGLQMLIKAPIMAVWAVCKIAGEGFEWTLA
TGIAVAILIISIAVLMVLVMPKFKAMQQLTDDINLVTRENLTGMRVVRAYNAQDYQEGKFERANSNLTNTQLFTNRAMSV
MMPLMGTIMNGLSLAIYWIGAYLIQDAGLTDKLTLFSNMVVFSSYAMQVVMSFLLMSMVFVLWPRADVSAHRVLEVLDTD
PLVKSGTAERGLTVQEAKQRGIITPAERARYADDLELAGEIEFRDVSFTYPDSREAMLEHISFTANRGDTVAIIGSTGSG
KSSLINLVPRFYDATDGEVLVDGVNVREYDLKTLRDKIGYVPQRSFLFKGTVESNVSYGDRPDEPEDVPVIDVSRMSGRK
AEREFLKAGEARELTAQEANRVREASDIAQATEFVSKMPKGFQSPIAQGGTNVSGGQKQRLSIARAVYRDPEILIFDDSF
SALDFKTDREVRDALKETAKDATKLIVAQRVGTIMDADCILVLEDGKVVGQGTHRELLETCEVYQEIAKSQLSEEELSA

Nucleotide


Download         Length: 1920 bp        

>NTDB_id=909852 SQ965_RS01120 WP_004218470.1 269706..271625(+) (rcrP) [Bifidobacterium animalis strain 20224-6]
ATGATACGAATCATGAAATATCTCTCCAAAACGGAGATAGGGCAGCTGGTGTTGTCGCTGGTCACCATTGTGGGCCAGGT
GTACTTCGACCTCGAACTGCCAAGCTATATGTCACAGATCACGCGGCTCGTGGAGACGCCGGGCAGCCAGATGCGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCGCTCGCATGCGCGGTGATCACCGGCTACTTCGCCGCG
CGCGTGGCGGCATCGTTCGGCCAGCGTCTGCGCTCGCTCGAGTTCCGCAAGGTGGAGTCGTTCGGGCCGTCCGAAATGCA
CCGCTTCTCCACGGCGAGCCTGATCACACGTTCGACGAACGACATCACGCAGATTCAGATGTTCATCACGATGGGCTTGC
AGATGCTCATCAAGGCGCCGATCATGGCCGTCTGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCTGTGGCGATCCTCATCATCTCGATCGCCGTGCTCATGGTGCTCGTCATGCCGAAGTTCAAGGCAATGCA
GCAGCTCACCGACGACATCAATCTGGTGACGCGCGAGAATCTGACCGGCATGCGCGTCGTGCGCGCCTACAATGCCCAGG
ACTACCAGGAAGGCAAGTTCGAGCGGGCGAACAGCAATCTGACGAACACACAGCTGTTCACGAACCGCGCGATGTCGGTG
ATGATGCCGCTCATGGGCACGATCATGAACGGGCTGTCGCTCGCAATCTACTGGATCGGCGCCTACCTGATCCAAGACGC
CGGCCTGACCGACAAACTCACGTTGTTCTCGAACATGGTCGTGTTCTCCAGCTACGCCATGCAGGTGGTGATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTGTGGCCGCGCGCCGACGTCTCCGCACACCGCGTGCTCGAAGTGCTCGACACCGAC
CCGCTCGTCAAGTCCGGCACCGCGGAGCGCGGGCTCACGGTGCAGGAGGCCAAGCAGCGCGGAATCATCACGCCAGCGGA
ACGTGCGCGATATGCCGACGACCTCGAGCTCGCCGGCGAGATCGAATTCCGCGACGTGAGCTTCACCTACCCCGATTCGC
GCGAGGCGATGCTCGAACACATCAGTTTCACGGCGAACAGGGGAGACACGGTGGCGATCATCGGCTCCACCGGTTCGGGC
AAGTCGTCGCTCATCAATCTCGTGCCGCGCTTCTACGATGCGACGGACGGCGAGGTGCTCGTGGACGGCGTGAATGTGCG
CGAATACGACTTGAAGACACTGCGCGACAAGATCGGCTACGTGCCGCAGCGCTCCTTCCTGTTCAAAGGCACCGTCGAAT
CGAATGTGAGCTACGGTGACCGGCCCGACGAACCCGAGGACGTGCCAGTGATCGACGTCTCGCGCATGAGCGGCCGCAAG
GCGGAACGGGAGTTCCTCAAGGCCGGCGAGGCGCGCGAGCTCACCGCGCAGGAGGCGAACCGCGTGCGCGAGGCGAGCGA
CATCGCACAGGCCACCGAATTCGTAAGCAAGATGCCGAAAGGCTTCCAGTCGCCGATCGCCCAGGGTGGCACGAATGTGT
CGGGCGGCCAGAAACAGCGCCTGTCGATTGCGCGCGCCGTGTACCGCGACCCGGAGATTCTGATCTTCGACGATTCGTTC
TCGGCACTCGACTTCAAAACCGACCGCGAGGTGCGCGACGCGTTGAAGGAGACGGCGAAGGACGCGACGAAGCTCATTGT
GGCGCAGCGCGTCGGCACGATCATGGACGCGGACTGCATTCTCGTGCTCGAGGACGGCAAGGTGGTGGGTCAAGGCACGC
ACCGCGAACTGCTCGAGACCTGCGAGGTGTACCAGGAGATCGCGAAATCGCAGCTGAGCGAGGAGGAGCTCAGTGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(378-559)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.69

100

0.495