Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SM123_RS07095 Genome accession   NZ_CP139419
Coordinates   1476047..1476886 (-) Length   279 a.a.
NCBI ID   WP_320909326.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1471047..1481886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS07075 (SM123_07075) - 1471790..1472665 (-) 876 WP_320909323.1 XRE/MutR family transcriptional regulator -
  SM123_RS07080 (SM123_07080) - 1472670..1473026 (-) 357 WP_320909324.1 hypothetical protein -
  SM123_RS07085 (SM123_07085) - 1473232..1475139 (-) 1908 WP_320909325.1 ABC-F family ATP-binding cassette domain-containing protein -
  SM123_RS07090 (SM123_07090) - 1475243..1475965 (-) 723 WP_009732560.1 M57 family metalloprotease -
  SM123_RS07095 (SM123_07095) endA 1476047..1476886 (-) 840 WP_320909326.1 DNA/RNA non-specific endonuclease Machinery gene
  SM123_RS07100 (SM123_07100) - 1476970..1477158 (-) 189 WP_024056063.1 DNA-directed RNA polymerase subunit beta -
  SM123_RS07105 (SM123_07105) murA 1477148..1478431 (-) 1284 WP_320909327.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SM123_RS07110 (SM123_07110) - 1478498..1478728 (-) 231 WP_195529252.1 DUF1146 family protein -
  SM123_RS07115 (SM123_07115) - 1478825..1479244 (-) 420 WP_003002471.1 F0F1 ATP synthase subunit epsilon -
  SM123_RS07120 (SM123_07120) atpD 1479258..1480664 (-) 1407 WP_070589431.1 F0F1 ATP synthase subunit beta -
  SM123_RS07125 (SM123_07125) - 1480750..1481631 (-) 882 WP_013903320.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30364.85 Da        Isoelectric Point: 9.4821

>NTDB_id=909537 SM123_RS07095 WP_320909326.1 1476047..1476886(-) (endA) [Streptococcus lingualis strain S5]
MAKQTVSKRTKQTLAGFVVATALAIGGYYFNQPAVKEATDQVVSVVTSSQQETPSKELASSVLTKSARSQLGNDLEWNGA
GAFVVKGNRTDLDASVASQPYADNKTKEVNGKTVPTVANAIMTKATRQYRDREATGSGLTDWKPAGWHQVHHLSGEYDHA
VDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWSNQANDPHSAGQNYYETLVRKALDKNKRIRYRVTLIYNHPEDLIPL
GSQIEAKSSDGSLEFNVFVPNVQSGISLDYQTGKVTVHQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=909537 SM123_RS07095 WP_320909326.1 1476047..1476886(-) (endA) [Streptococcus lingualis strain S5]
ATGGCAAAACAAACAGTAAGCAAACGAACCAAACAAACCCTAGCAGGTTTTGTGGTGGCAACGGCCCTAGCTATTGGGGG
CTATTATTTTAATCAACCGGCGGTAAAAGAAGCAACGGATCAGGTTGTTTCGGTGGTAACTAGTAGCCAGCAAGAAACAC
CTAGTAAAGAGTTAGCTAGCTCTGTACTAACGAAATCTGCCCGTTCACAATTAGGAAATGACTTGGAATGGAATGGTGCT
GGAGCCTTTGTAGTTAAGGGAAATCGAACAGATCTGGATGCCAGTGTGGCTAGTCAACCCTATGCAGATAACAAGACAAA
AGAAGTCAATGGAAAGACCGTGCCGACGGTTGCGAACGCTATTATGACCAAGGCGACTCGCCAGTATAGAGATCGGGAGG
CAACAGGAAGTGGTCTAACCGATTGGAAACCAGCAGGTTGGCATCAGGTCCATCATCTGTCAGGCGAGTATGACCATGCT
GTGGATCGCGGTCATCTATTGGGCTACGCCTTGATCGGTAATCTCAAAGGTTTCGATGCTTCGACTAGCAATCCCAAAAA
TATCGCTGTACAAACGGCTTGGTCCAATCAAGCCAATGATCCTCATTCCGCCGGTCAAAACTATTATGAGACCCTGGTCC
GAAAAGCACTGGATAAGAACAAGCGGATCCGCTATCGGGTGACCTTGATCTACAACCATCCAGAAGATCTGATTCCATTA
GGATCACAGATCGAAGCCAAATCGAGTGATGGGTCCCTTGAGTTCAATGTCTTTGTTCCTAATGTTCAAAGTGGGATTAG
CCTGGATTACCAGACAGGAAAAGTAACCGTTCATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.043

98.925

0.624
  endA Streptococcus pneumoniae D39

63.043

98.925

0.624
  endA Streptococcus pneumoniae R6

63.043

98.925

0.624
  endA Streptococcus pneumoniae TIGR4

63.043

98.925

0.624