Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SM121_RS08200 Genome accession   NZ_CP139418
Coordinates   1671613..1672452 (-) Length   279 a.a.
NCBI ID   WP_155171557.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1666613..1677452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS08180 (SM121_08180) - 1666718..1667899 (-) 1182 WP_320910827.1 MFS transporter -
  SM121_RS08185 (SM121_08185) - 1667921..1668796 (-) 876 WP_320910828.1 XRE/MutR family transcriptional regulator -
  SM121_RS08190 (SM121_08190) - 1668797..1670704 (-) 1908 WP_320910829.1 ABC-F family ATP-binding cassette domain-containing protein -
  SM121_RS08195 (SM121_08195) - 1670809..1671531 (-) 723 WP_155171559.1 M57 family metalloprotease -
  SM121_RS08200 (SM121_08200) endA 1671613..1672452 (-) 840 WP_155171557.1 DNA/RNA non-specific endonuclease Machinery gene
  SM121_RS08205 (SM121_08205) - 1672536..1672724 (-) 189 WP_003011983.1 DNA-directed RNA polymerase subunit beta -
  SM121_RS08210 (SM121_08210) murA 1672714..1673997 (-) 1284 WP_320910830.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SM121_RS08215 (SM121_08215) - 1674064..1674294 (-) 231 WP_003011760.1 DUF1146 family protein -
  SM121_RS08220 (SM121_08220) - 1674391..1674810 (-) 420 WP_003012328.1 F0F1 ATP synthase subunit epsilon -
  SM121_RS08225 (SM121_08225) atpD 1674824..1676230 (-) 1407 WP_320910831.1 F0F1 ATP synthase subunit beta -
  SM121_RS08230 (SM121_08230) - 1676319..1677200 (-) 882 WP_320910832.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30507.99 Da        Isoelectric Point: 9.4819

>NTDB_id=909497 SM121_RS08200 WP_155171557.1 1671613..1672452(-) (endA) [Streptococcus dentalis strain S1]
MTKQVFTKRTKQTLAGFVVATALAIGGYYFNQPTVKEATDQVVSVVTSSQQETPSKELASSVLTKSARSQLGNDLEWNGA
GAFVVKGNRTDLDASVASQPYADNKTKEVNGKTVPTVANAIMTKATRQYRDRDATGSGLTDWKPAGWHQVHNLSGEYDHA
VDRGHLLGYALIGNLKGFDASTSNPKNIAVQTSWSNQANDPHSTGQNYYETLVRKALDKNKRIRYRVTLIYNQPEDLIPL
GSHIEAKSSDGTLEFNVFVPNVQSGISLDYQTGKVTVHQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=909497 SM121_RS08200 WP_155171557.1 1671613..1672452(-) (endA) [Streptococcus dentalis strain S1]
ATGACAAAACAAGTATTCACGAAACGAACCAAACAAACCCTAGCAGGTTTTGTGGTGGCAACGGCCCTAGCTATCGGGGG
CTATTATTTTAATCAACCGACGGTAAAAGAAGCGACAGATCAGGTTGTTTCGGTGGTGACTAGTAGCCAACAAGAAACAC
CTAGTAAAGAGTTAGCCAGCTCGGTACTAACGAAATCTGCCCGTTCGCAATTGGGGAATGACTTGGAATGGAATGGTGCT
GGAGCCTTTGTAGTTAAGGGGAATCGCACAGATCTGGATGCCAGTGTGGCTAGTCAACCCTATGCGGATAACAAGACAAA
AGAAGTCAATGGAAAGACCGTGCCGACGGTTGCGAACGCTATTATGACCAAGGCGACTCGCCAGTACAGAGATCGAGATG
CAACAGGTAGTGGCCTAACCGATTGGAAACCAGCAGGTTGGCATCAGGTCCACAATCTGTCCGGTGAGTATGACCATGCT
GTGGATCGGGGCCATTTATTGGGCTACGCCTTGATCGGCAATCTCAAAGGTTTCGATGCTTCGACTAGCAATCCCAAAAA
TATCGCCGTTCAGACATCGTGGTCCAATCAAGCCAATGATCCTCATTCCACTGGCCAAAACTACTACGAGACCCTGGTTC
GAAAAGCACTGGATAAGAACAAGCGGATCCGCTATCGGGTGACCTTGATCTACAATCAGCCAGAAGATTTGATTCCTTTG
GGGTCTCATATCGAAGCCAAATCGAGTGACGGGACGCTTGAATTCAATGTTTTTGTTCCTAATGTTCAAAGTGGGATTAG
CCTGGATTACCAGACAGGCAAAGTAACCGTCCATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.043

98.925

0.624
  endA Streptococcus pneumoniae D39

63.043

98.925

0.624
  endA Streptococcus pneumoniae R6

63.043

98.925

0.624
  endA Streptococcus pneumoniae TIGR4

63.043

98.925

0.624