Detailed information NTG0908664

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: SOI78_RS09845
• Genome accession: NZ_CP139276
• Coordinates: 2087473..2088288 (-)
• Length: 271 a.a.
• NCBI ID: WP_002121460.1
• Uniprot ID: A0A009NS11
• Organism: Acinetobacter pittii strain AN37
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2082473..2093288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI78_RS09815 (SOI78_09815)	-	2082781..2083221 (-)	441	WP_002121449.1	SRPBCC family protein	-
SOI78_RS09820 (SOI78_09820)	tadA	2083292..2083795 (-)	504	WP_002121378.1	tRNA adenosine(34) deaminase TadA	-
SOI78_RS09825 (SOI78_09825)	hibch	2083801..2084925 (-)	1125	WP_016803061.1	enoyl-CoA hydratase/isomerase family protein	-
SOI78_RS09830 (SOI78_09830)	ung	2084922..2085635 (-)	714	WP_002121342.1	uracil-DNA glycosylase	-
SOI78_RS09835 (SOI78_09835)	-	2085689..2086285 (-)	597	WP_002121363.1	6-pyruvoyl trahydropterin synthase family protein	-
SOI78_RS09840 (SOI78_09840)	gspK	2086513..2087472 (-)	960	WP_002121457.1	type II secretion system minor pseudopilin GspK	-
SOI78_RS09845 (SOI78_09845)	xcpW	2087473..2088288 (-)	816	WP_002121460.1	type II secretion system minor pseudopilin GspJ	Machinery gene
SOI78_RS09850 (SOI78_09850)	xcpV	2088288..2088668 (-)	381	WP_002121425.1	type II secretion system minor pseudopilin GspI	Machinery gene
SOI78_RS09855 (SOI78_09855)	-	2088658..2089212 (-)	555	WP_002121405.1	type II secretion system protein	-
SOI78_RS09860 (SOI78_09860)	-	2089219..2089827 (-)	609	WP_002121414.1	TetR/AcrR family transcriptional regulator	-
SOI78_RS09865 (SOI78_09865)	ycfH	2089864..2090637 (-)	774	WP_002121462.1	TatD family hydrolase	-
SOI78_RS09870 (SOI78_09870)	pilZ	2090655..2090996 (-)	342	WP_002121335.1	PilZ domain-containing protein	-
SOI78_RS09875 (SOI78_09875)	holB	2091007..2091987 (-)	981	WP_002121362.1	DNA polymerase III subunit delta'	-
SOI78_RS09880 (SOI78_09880)	kdsB	2092001..2092762 (-)	762	WP_002121419.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 271 a.a.
• Molecular weight: 30932.32 Da
• Isoelectric Point: 9.9694

>NTDB_id=908664 SOI78_RS09845 WP_002121460.1 2087473..2088288(-) (xcpW) [Acinetobacter pittii strain AN37]
MIKNKSFRSPSSASRLAVRSEQMMRGYSEQSSSSCTQTKHCFKDSHTRNIVSHLATRSSSARLTRASGFTLVELLVSIAI
FAILSLLGWKVFDYLLKVRDRNTQHEVQLFELQDAYQQVLRDTLQIIPLSANQGGQLRPALEIDNQVLRFSKAGVTDPLK
QGLSPFERIEYRYDPDQKKLYRLKYSNLNTSNREQPLSSTLLSQVEQFQIMVLTPQEVTKWPEVNIDPTKPDEFRKLPKG
IKMQLTVAGVNYEWIYSLNQGDLSLSKQGGQ

Nucleotide

• Length: 816 bp

>NTDB_id=908664 SOI78_RS09845 WP_002121460.1 2087473..2088288(-) (xcpW) [Acinetobacter pittii strain AN37]
ATGATAAAGAATAAAAGTTTTCGCTCTCCAAGCTCAGCTTCACGTCTTGCGGTACGATCGGAGCAGATGATGAGGGGTTA
CTCCGAGCAAAGCTCTTCGTCTTGCACTCAGACAAAGCATTGCTTTAAAGACTCTCACACTCGAAACATAGTTTCTCATC
TTGCGACACGATCGAGCAGTGCTCGATTAACTCGTGCCTCAGGATTTACTTTAGTTGAGCTTTTAGTTTCAATTGCAATT
TTTGCTATTTTATCTTTGTTGGGTTGGAAGGTTTTTGACTATTTATTAAAAGTTCGCGATCGTAATACTCAACATGAAGT
GCAGCTATTTGAATTACAAGATGCTTATCAACAAGTTTTGCGTGATACATTGCAAATTATACCTTTATCAGCCAATCAAG
GCGGGCAATTACGTCCAGCTTTAGAGATTGATAATCAAGTTCTCCGCTTTAGTAAGGCGGGTGTTACTGATCCATTAAAG
CAAGGATTATCACCTTTTGAGCGTATCGAATATCGATATGATCCTGATCAAAAAAAGCTTTATCGCCTTAAATATAGTAA
CTTAAATACTTCAAATAGAGAGCAACCCTTATCAAGTACGCTGTTGAGCCAAGTTGAACAATTTCAAATTATGGTTTTGA
CACCTCAAGAAGTAACAAAGTGGCCTGAAGTTAATATTGACCCTACAAAACCTGATGAATTTAGGAAGTTGCCAAAAGGA
ATAAAAATGCAACTCACGGTTGCAGGTGTAAATTATGAGTGGATTTATAGCTTAAACCAAGGTGACTTATCGCTCTCCAA
ACAGGGAGGTCAATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (121-250)

• Prokaryotic N-terminal methylation motif (N_methyl) (65-87)

3D structure

• AlphaFold DB: A0A009NS11

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	88.889	83.026	0.738