Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SOI71_RS01780 Genome accession   NZ_CP139251
Coordinates   379525..379947 (+) Length   140 a.a.
NCBI ID   WP_063097785.1    Uniprot ID   A0AB33BG91
Organism   Acinetobacter pittii strain MCR53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374525..384947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS01765 (SOI71_01765) - 374533..375222 (+) 690 WP_082188414.1 pilus assembly protein PilX -
  SOI71_RS01770 (SOI71_01770) - 375248..378952 (+) 3705 WP_063097783.1 PilC/PilY family type IV pilus protein -
  SOI71_RS01775 (SOI71_01775) - 378962..379525 (+) 564 WP_063097784.1 type IV pilin protein -
  SOI71_RS01780 (SOI71_01780) comF 379525..379947 (+) 423 WP_063097785.1 type IV pilin protein Machinery gene
  SOI71_RS01785 (SOI71_01785) rpsP 380094..380345 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI71_RS01790 (SOI71_01790) rimM 380365..380913 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI71_RS01795 (SOI71_01795) trmD 380956..381711 (+) 756 WP_104075344.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI71_RS01800 (SOI71_01800) rplS 381931..382299 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI71_RS01805 (SOI71_01805) lip 382351..383292 (-) 942 WP_104075343.1 lipase family alpha/beta hydrolase -
  SOI71_RS01810 (SOI71_01810) - 383408..384439 (-) 1032 WP_104075342.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15484.44 Da        Isoelectric Point: 8.4251

>NTDB_id=908325 SOI71_RS01780 WP_063097785.1 379525..379947(+) (comF) [Acinetobacter pittii strain MCR53]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRGNRADVQSEMMQTAQRLQSYYAINHHYTNATLDNGLTSKDYPTS
NAAYGLVLNVNDQTWTLTATPKTTTIQSGNGAVILNSEGQKCWTKGQSCTTSTTSNWDGR

Nucleotide


Download         Length: 423 bp        

>NTDB_id=908325 SOI71_RS01780 WP_063097785.1 379525..379947(+) (comF) [Acinetobacter pittii strain MCR53]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAATTAATGATTGTGGTTGCCATTATTGCAATTTTGGCAGCAATTGCTTA
TCCCTCCTATACACAGTATAAAATTCGCGGAAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAGCGTCTAC
AAAGTTATTATGCTATTAATCATCATTATACAAATGCAACATTAGATAATGGATTAACAAGTAAAGACTATCCCACCTCA
AATGCAGCTTATGGACTTGTTTTAAATGTAAATGATCAAACATGGACGCTTACTGCAACTCCTAAAACAACTACGATTCA
ATCTGGAAATGGAGCTGTTATTTTGAACAGTGAAGGGCAAAAATGTTGGACCAAAGGTCAGTCTTGTACAACCTCCACCA
CATCAAATTGGGATGGTCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

52.778

100

0.543
  pilE Acinetobacter baumannii D1279779

52.941

97.143

0.514