Detailed information NTG0090832

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: NC3_RS12325
• Genome accession: NZ_AP025264
• Coordinates: 2403912..2406296 (-)
• Length: 794 a.a.
• NCBI ID: WP_171465622.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain NC3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2398912..2411296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NC3_RS12290 (NC3_23910)	-	2400015..2400743 (+)	729	WP_007501456.1	amino acid ABC transporter ATP-binding protein	-
NC3_RS12295 (NC3_23920)	-	2400758..2401567 (+)	810	WP_017367698.1	transporter substrate-binding domain-containing protein	-
NC3_RS12300 (NC3_23930)	-	2401648..2402301 (+)	654	WP_007501460.1	amino acid ABC transporter permease	-
NC3_RS12305 (NC3_23940)	-	2402317..2402967 (+)	651	WP_008342693.1	amino acid ABC transporter permease	-
NC3_RS12310 (NC3_23950)	-	2403006..2403137 (-)	132	WP_008362324.1	YrzQ family protein	-
NC3_RS12315 (NC3_23960)	-	2403158..2403349 (-)	192	WP_003216308.1	hypothetical protein	-
NC3_RS12320 (NC3_23970)	-	2403363..2403821 (-)	459	WP_019743027.1	PRC-barrel domain-containing protein	-
NC3_RS12325 (NC3_23980)	recD2	2403912..2406296 (-)	2385	WP_171465622.1	ATP-dependent RecD-like DNA helicase	Machinery gene
NC3_RS12330 (NC3_23990)	-	2406316..2406969 (-)	654	WP_048001807.1	tetratricopeptide repeat protein	-
NC3_RS12335 (NC3_24000)	mnmA	2407031..2408149 (-)	1119	WP_008342709.1	tRNA 2-thiouridine(34) synthase MnmA	-
NC3_RS12340 (NC3_24010)	-	2408244..2409386 (-)	1143	WP_008342711.1	cysteine desulfurase family protein	-
NC3_RS12345 (NC3_24020)	cymR	2409405..2409824 (-)	420	WP_142155582.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 88931.30 Da
• Isoelectric Point: 5.0189

>NTDB_id=90832 NC3_RS12325 WP_171465622.1 2403912..2406296(-) (recD2) [Bacillus altitudinis strain NC3]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGKLGNQTLHQIMRDPSVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQAYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNDYKVTEMDVANQIIALGEGKDMIIEDERCYHPSLFYAEQSVAKRIQKIVAQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPGDYKKDE
AFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEDQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAIPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSSDQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQQILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLTETEEVMDAELAALQKELPFSVHDANIGMEGITPFDFMQE

Nucleotide

• Length: 2385 bp

>NTDB_id=90832 NC3_RS12325 WP_171465622.1 2403912..2406296(-) (recD2) [Bacillus altitudinis strain NC3]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAAGACGAACCGTTTTTAAAAGGGACGGTTCAAGCCGTTATTTTCCATAA
CGAAAGTAATTTATACTCGGTGTTAAAAGTAAAAGTCATTGAAACATCAGAGAATTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCGCTTCATGAGGAGGAAACCTACACCTTCTATGGCAAGGTCACAAGTCATCCAAAGTTTGGCGAG
CAGTTTCAAGCCACTCATTTTCAAAAGGAAGTCCCTACAACAAAGCAAGGCATCATTCATTATCTCTCTAGTGACTTGTT
TGAAGGGATTGGGAAAAAGACGGCGGAAGAAATCGTCGGCAAGCTTGGCAATCAGACGCTTCATCAAATTATGCGTGATC
CGTCTGTGTTGTATGACGTCCCTCGCCTGTCAAAAAAGAAGGCTGATAAGCTGGCTGCCGCACTTCAAGAGCATCAAGGG
CTTGAGCAAATCATGATCAGCCTGAATCAATATGGCTTTGGTCCTCAGCTTAGTATGAAGATTTACCAAGCGTACGAGAG
TGAAACGTTGCAGAAAATTGAAGAAAACCCTTATCAGCTCGTCAAAGACGTCGAGGGGATTGGATTTATTAAAGCAGATG
AACTCGGCGCTAGAACAGGGATATCTGGAAATGATCCAGAACGCATTCGTGCAGCCCTTTTGTATACTGTTGAGACAGCA
AGCCTGCAAGACGGTCATACGTACATACAAACGAAAGATCTGATCGTCGAAACCCGTAAACTACTGAATCAAACCGGCAA
TGACTACAAAGTGACTGAAATGGACGTTGCCAATCAGATTATTGCACTTGGTGAAGGGAAAGACATGATCATTGAAGATG
AGCGCTGTTATCATCCGTCGCTCTTTTATGCGGAGCAAAGTGTGGCAAAACGCATTCAAAAAATTGTCGCTCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTTCTGCTTGCACTCGGTGAACTGGAGGAACGGCTTGGTGTCCAGTATGCACC
AACCCAAAAAGAAGCCATTCAAAAGGCACTCATGTCTCCAATGCTGCTTTTAACAGGCGGACCGGGTACAGGGAAAACGA
CGGTCATTAAAGGGATTGTCGAGCTTTACAGCGATCTTCACGGCGTATCTCTTGACCCGGGTGATTATAAAAAAGATGAA
GCATTTCCGTTCGTGCTTGCCGCACCAACTGGACGTGCTGCGAAACGAATGACAGAATCCACTGGACTTCCTGCTGTGAC
CATTCACCGGCTGCTAGGCTGGAATGGATCAGAAGGCTTCTCACATGATGAAGACCAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCGAGTATGCTGGATATTTGGCTGGCGAACCATTTGTTTAAGGCGATCCCAGATCATATTCAAGTCATT
ATGGTTGGAGACGAACATCAACTTCCATCTGTCGGACCTGGTCAAGTGTTAAGAGACCTGCTTGCGTCACAAGCTATACC
GGCAGTTACACTAACTGATATTTACCGGCAGGCAGACGGTTCAACAATTGTTGAGCTTGCGCACGATATGAAAAATGGTG
TTTTGCCAAAGGATATTACTGCACGCTCGAAGGATCGATCCTTTATTCAGTGCTCTAGTGACCAAATGAAAGAAGTCATC
GAGAAAGTAGTCAGCAATGCTGCTCAAAAGGGGTATTCAGCAAAGGACATTCAAGTACTTGCCCCGATGTATAAAGGAAA
AGCAGGCATTAATGAACTGAATAAAATGCTTCAGCAAATTTTGAATCCTAAAAAGCCAAAAGGAAGAGAAATTCCTTTTG
GTGATGTCGTCTACCGGACAGGTGATAAGGTACTTCAGCTTGTCAATCAGCCCGAGAATAACATTTTTAATGGAGATATT
GGCGAAATTGTCTCGATCTTTTATGCGAAAGAAAACACGGAAAAAGAAGATATGGCGGTCATCTCCTTTGATGGAAATGA
AATCACGTTTACGAAAAAAGATTTTCATCAATTTACACACGCTTATTGTTGCTCGATTCATAAATCCCAGGGCAGTGAAT
TCCCAATCGTGGTGCTGCCAGTCGTGAGAAGTTATTATCGAATGCTTCGAAGAAATTTGCTTTACACGGCCATTACACGA
AGTAAAAAGTTTTTAATTTTGTGCGGCGAGGAATCAGCATTAGAGTGGGGCGTAAAAAATAATGAAGACTCCCTCAGACA
AACGTCTTTAACCATGCGTCTTACTGAAACGGAAGAAGTCATGGATGCTGAACTAGCAGCCCTCCAAAAAGAACTTCCTT
TCAGCGTACACGATGCCAATATTGGCATGGAGGGAATCACCCCGTTTGATTTTATGCAAGAGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• AAA domain (AAA_30) (345-553)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80.252	100	0.804