Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NC3_RS07920 Genome accession   NZ_AP025264
Coordinates   1560943..1561722 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain NC3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555943..1566722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS07900 (NC3_15120) trmFO 1556647..1557951 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NC3_RS07905 (NC3_15130) xerC 1558014..1558931 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  NC3_RS07910 (NC3_15140) hslV 1558946..1559491 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NC3_RS07915 (NC3_15150) hslU 1559508..1560908 (+) 1401 WP_236798057.1 HslU--HslV peptidase ATPase subunit -
  NC3_RS07920 (NC3_15160) codY 1560943..1561722 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NC3_RS07925 (NC3_15170) flgB 1562011..1562400 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  NC3_RS07930 (NC3_15180) flgC 1562400..1562852 (+) 453 WP_008344813.1 flagellar basal body rod protein FlgC -
  NC3_RS07935 (NC3_15190) fliE 1562864..1563181 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NC3_RS07940 (NC3_15200) fliF 1563232..1564824 (+) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  NC3_RS07945 (NC3_15210) fliG 1564836..1565852 (+) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  NC3_RS07950 (NC3_15220) fliH 1565845..1566609 (+) 765 WP_048002828.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=90820 NC3_RS07920 WP_007499612.1 1560943..1561722(+) (codY) [Bacillus altitudinis strain NC3]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=90820 NC3_RS07920 WP_007499612.1 1560943..1561722(+) (codY) [Bacillus altitudinis strain NC3]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAGGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGCAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGCAAATTGGAAAGTGCAGGTGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment