Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SON02_RS10225 Genome accession   NZ_CP139211
Coordinates   2363790..2364623 (+) Length   277 a.a.
NCBI ID   WP_135027508.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2358790..2369623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS10200 (SON02_10175) atpD 2359150..2360556 (+) 1407 WP_135027494.1 F0F1 ATP synthase subunit beta -
  SON02_RS10205 (SON02_10180) - 2360566..2360982 (+) 417 WP_135027497.1 F0F1 ATP synthase subunit epsilon -
  SON02_RS10210 (SON02_10185) - 2361988..2362218 (+) 231 WP_135027500.1 DUF1146 family protein -
  SON02_RS10215 (SON02_10190) murA 2362291..2363565 (+) 1275 WP_135027503.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SON02_RS10220 (SON02_10195) - 2363565..2363759 (+) 195 WP_135027506.1 DNA-directed RNA polymerase subunit beta -
  SON02_RS10225 (SON02_10200) endA 2363790..2364623 (+) 834 WP_135027508.1 DNA/RNA non-specific endonuclease Machinery gene
  SON02_RS10230 (SON02_10205) - 2365524..2366738 (+) 1215 WP_135027511.1 amidohydrolase -
  SON02_RS10235 (SON02_10210) - 2366831..2367685 (+) 855 WP_167752609.1 MurR/RpiR family transcriptional regulator -
  SON02_RS10240 (SON02_10215) - 2368319..2369029 (+) 711 WP_135027517.1 N-acetylmannosamine-6-phosphate 2-epimerase -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 30391.09 Da        Isoelectric Point: 9.9032

>NTDB_id=908089 SON02_RS10225 WP_135027508.1 2363790..2364623(+) (endA) [Streptococcus sp. LysM4]
MVRRKTKTQSIRLASFLVALLLALGGYFLTEQPASVSNEQVTTRPRDNGLAPSEELASSILTDSVRKQLGTDIVYNGAGA
FVVNGNQTALDASVASKPYAENKIKTAQGKVVPTVANALLSKTTRQYQKREETGNGSTSWRPAGWHQVKNLEGEYNHAID
RGHLLAYSLVGGLKGYDASTSNPKNIAVQTAWANQANRHDATGQNYFETQIRRALDKNKRIRYRVTLIYQSEDDLVPVGS
HLEAKAADGSLEFNVFVPNVQQGLTIDYNSGQIRLIQ

Nucleotide


Download         Length: 834 bp        

>NTDB_id=908089 SON02_RS10225 WP_135027508.1 2363790..2364623(+) (endA) [Streptococcus sp. LysM4]
ATGGTAAGAAGAAAAACAAAAACACAGAGTATTCGTCTGGCTAGTTTTTTGGTCGCGCTTTTGTTGGCGTTGGGAGGTTA
TTTTTTAACAGAACAGCCAGCTTCGGTATCAAATGAGCAGGTAACAACAAGGCCAAGGGATAATGGTCTGGCTCCCTCAG
AGGAGTTGGCTAGCTCCATTTTGACCGACTCGGTAAGAAAACAGTTAGGGACAGATATCGTCTATAATGGAGCGGGTGCA
TTTGTTGTCAATGGCAATCAGACCGCTCTTGATGCTTCTGTAGCTAGTAAACCCTATGCGGAGAATAAGATTAAGACGGC
ACAAGGAAAAGTGGTTCCAACAGTCGCCAATGCTCTCTTAAGCAAGACAACACGCCAGTATCAAAAGCGTGAAGAAACAG
GTAATGGCTCGACCAGCTGGAGGCCGGCTGGCTGGCATCAGGTGAAAAATTTAGAAGGAGAGTACAATCACGCTATTGAT
AGAGGGCATTTACTGGCTTATTCCTTAGTGGGAGGCTTAAAGGGTTACGATGCCTCCACCAGCAATCCTAAGAACATAGC
TGTCCAGACTGCTTGGGCCAATCAGGCCAACCGTCACGATGCGACAGGTCAAAATTATTTTGAAACGCAGATTCGTAGAG
CCTTGGATAAGAACAAGCGGATCCGCTATCGCGTGACCTTAATCTATCAATCTGAAGATGATTTGGTACCTGTAGGTAGC
CACTTGGAAGCAAAAGCAGCAGACGGTAGTCTTGAGTTCAACGTCTTTGTCCCCAATGTGCAACAAGGATTAACTATTGA
TTATAACAGCGGGCAGATTCGCCTTATTCAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(79-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.156

92.419

0.556
  endA Streptococcus pneumoniae D39

60.156

92.419

0.556
  endA Streptococcus pneumoniae R6

60.156

92.419

0.556
  endA Streptococcus pneumoniae TIGR4

60.156

92.419

0.556