Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SK061_RS16975 Genome accession   NZ_CP139190
Coordinates   3286407..3288767 (-) Length   786 a.a.
NCBI ID   WP_006637809.1    Uniprot ID   -
Organism   Bacillus sonorensis strain PMC204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3281407..3293767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS16955 (SK061_16955) - 3281458..3283035 (+) 1578 WP_006637805.1 SH3 domain-containing protein -
  SK061_RS16960 (SK061_16960) dtd 3283064..3283507 (-) 444 WP_006637806.1 D-aminoacyl-tRNA deacylase -
  SK061_RS16965 (SK061_16965) - 3283520..3285721 (-) 2202 WP_006637807.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  SK061_RS16970 (SK061_16970) - 3285889..3286401 (-) 513 WP_006637808.1 adenine phosphoribosyltransferase -
  SK061_RS16975 (SK061_16975) recJ 3286407..3288767 (-) 2361 WP_006637809.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SK061_RS16980 (SK061_16980) - 3288835..3289128 (-) 294 WP_006637810.1 lipopolysaccharide assembly LapA domain-containing protein -
  SK061_RS16985 (SK061_16985) - 3289275..3289781 (-) 507 WP_006637811.1 cation:proton antiporter regulatory subunit -
  SK061_RS16990 (SK061_16990) secDF 3289913..3292138 (-) 2226 WP_006637812.1 protein translocase subunit SecDF -
  SK061_RS16995 (SK061_16995) - 3292178..3292474 (-) 297 WP_006637813.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88354.91 Da        Isoelectric Point: 4.9109

>NTDB_id=907743 SK061_RS16975 WP_006637809.1 3286407..3288767(-) (recJ) [Bacillus sonorensis strain PMC204]
MLASKMRWDVQTPDKEKVESLSGQLGITPLAASLLVMRGCDTADQAASFLHGKDVGFHDPYLLKDMEKAVRRIEQAISEH
EHIMIYGDYDADGVTSTTVLLQTLKKFSAQVDFYIPDRFKEGYGPNEAAFRQIKDQGYSLIITVDTGIAGVHEADVAKEL
GIDLIITDHHEPGPVLPDAYAIIHPKQPGCSYPFKELAGVGVAFKLAHALSGDVPEELLDLCAIGTIADLVPLHDENRHI
AKLGMAQFRKTKRPGLIALTKIAGAEIQNANEETIGFQIAPRINAVGRIDQADPAVHLLNTEDETEAIELAEEINSLNKE
RQKIVNQITEEAVEMIEEQGLDQPVIVAARPGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNQDDVGALRERINRQAEAVLTEEDFIPVQEVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVEDVEIEEARKIGANQNHLKLMLADGQAKLDCIGFYKGEIEESVVPGAKISLVGELSINEWNNRKKPQLMIKDA
AVKEWQLFDFRGKRTWEEQILKLDPEKRVFICFREESRAKLAGTGLRDELILIRGEEDAVRIDLHNRYAVFIDTPQSIDI
FDHVINGKRLERIYLIFTQTDDHFFSTFPTRDYFKWYYAFLLKRGSFDLVKYGAELAKHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYGAAKRDLTDSETYRKKQRLIELEQKLLYSSADELKQWLSKRMDESSEAYESMRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=907743 SK061_RS16975 WP_006637809.1 3286407..3288767(-) (recJ) [Bacillus sonorensis strain PMC204]
ATGTTAGCGTCAAAAATGCGTTGGGATGTGCAAACACCCGACAAAGAAAAGGTGGAGTCGCTCTCCGGACAATTGGGTAT
CACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGCTGCGATACAGCTGATCAAGCAGCTTCGTTTTTGCACGGCAAGG
ATGTCGGTTTTCATGACCCATATCTGCTTAAAGATATGGAAAAAGCAGTTCGGCGAATCGAACAGGCTATTTCAGAACAT
GAACATATCATGATTTATGGTGATTATGATGCGGACGGTGTGACAAGCACGACCGTTCTTTTGCAGACTTTAAAAAAATT
TTCAGCACAAGTCGATTTCTATATACCCGACCGTTTTAAAGAAGGCTACGGCCCTAATGAAGCGGCATTCCGTCAAATAA
AAGATCAGGGATATTCGTTGATCATCACTGTGGATACTGGGATTGCCGGCGTACATGAAGCAGATGTCGCCAAGGAGCTC
GGCATCGATCTGATTATTACAGACCACCACGAGCCCGGTCCGGTATTGCCTGACGCGTATGCGATCATCCATCCGAAGCA
GCCCGGCTGCAGCTACCCTTTTAAAGAACTGGCGGGAGTCGGGGTGGCTTTTAAGCTTGCCCATGCCCTTAGCGGGGACG
TTCCAGAGGAGCTGCTCGACTTATGCGCCATCGGTACGATTGCCGATCTCGTACCTCTTCATGATGAAAACAGGCACATC
GCCAAGCTTGGAATGGCGCAGTTCAGGAAAACAAAGCGTCCTGGTTTAATCGCGCTGACCAAGATAGCGGGTGCGGAGAT
TCAAAACGCGAATGAAGAAACGATCGGTTTTCAAATTGCTCCACGCATTAATGCAGTCGGCAGGATTGACCAGGCTGACC
CGGCCGTTCATCTGTTGAATACTGAGGACGAAACAGAAGCGATCGAGCTGGCCGAGGAAATCAACAGCCTGAATAAAGAG
CGCCAAAAAATCGTCAACCAGATCACAGAGGAAGCGGTTGAAATGATAGAGGAGCAGGGGCTTGACCAGCCTGTGATCGT
TGCCGCCCGGCCCGGCTGGAACCCCGGAGTGGTCGGAATCGTCGCTTCCAAGCTTGTCGAACGGTTTTACCGGCCGGCCA
TCGTGCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGATCAGCACGAAGCATCAAAGGCTTTGACCTGTTTCAAAAC
CTTTCAGAATGCCGGGATATCCTTCCCCACTTCGGCGGCCATCCGATGGCTGCCGGGATGACGCTGAATCAGGATGACGT
CGGCGCCTTAAGAGAAAGAATCAACAGGCAGGCCGAAGCTGTGTTAACAGAGGAAGATTTCATTCCCGTACAGGAGGTTG
ATCTTTGCTGCCGATTGGAGGATATAACGGTTGACAGCATTGCCGAAATGAACATGCTGGCTCCATTTGGCACGGGAAAT
CCAAAGCCGTTTGTGCTTGTCGAAGACGTCGAAATTGAGGAAGCGAGAAAAATCGGCGCCAATCAGAATCATCTGAAGCT
CATGCTGGCCGACGGTCAGGCGAAGCTGGACTGCATCGGCTTTTATAAAGGCGAAATCGAAGAGAGCGTCGTTCCCGGAG
CAAAGATTTCTCTTGTGGGCGAATTGTCGATCAATGAATGGAACAACAGAAAAAAACCGCAGCTGATGATAAAAGATGCG
GCTGTGAAAGAATGGCAGCTGTTTGATTTTAGAGGAAAGCGGACATGGGAAGAACAAATCCTGAAACTGGACCCGGAAAA
ACGCGTATTCATTTGTTTTCGAGAGGAATCCAGAGCAAAACTGGCGGGTACCGGTCTTCGGGATGAGCTGATTCTGATTC
GCGGGGAAGAAGATGCAGTTCGAATCGATCTACATAATCGCTATGCGGTTTTCATTGATACGCCGCAGTCGATTGACATA
TTCGACCATGTAATAAACGGAAAGCGGCTTGAGCGGATTTATTTAATTTTCACTCAAACGGATGACCACTTTTTCTCAAC
TTTCCCGACAAGGGACTATTTTAAATGGTACTATGCTTTTCTTCTGAAGAGAGGTTCCTTCGACTTGGTCAAATACGGCG
CAGAGCTGGCCAAGCATAAGGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTGTATGGTGCCGCAAAACGGGATTTGACAGATTCTGAAACCTACCGGAAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTTTTATATTCTTCGGCGGATGAGCTTAAACAGTGGCTGAGTAAGCGGATGG
ATGAGAGTTCTGAAGCTTACGAAAGTATGAGGAGGACATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-436)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.338

100

0.693