Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SK061_RS16895 Genome accession   NZ_CP139190
Coordinates   3268324..3270690 (-) Length   788 a.a.
NCBI ID   WP_034326475.1    Uniprot ID   A0A7Y8RYE5
Organism   Bacillus sonorensis strain PMC204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3263324..3275690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS16875 (SK061_16875) - 3266265..3267323 (-) 1059 WP_006637791.1 AI-2E family transporter -
  SK061_RS16880 (SK061_16880) - 3267418..3267549 (-) 132 WP_006637792.1 DUF3918 family protein -
  SK061_RS16885 (SK061_16885) - 3267565..3267756 (-) 192 WP_006637793.1 hypothetical protein -
  SK061_RS16890 (SK061_16890) - 3267774..3268235 (-) 462 WP_006637794.1 PRC-barrel domain-containing protein -
  SK061_RS16895 (SK061_16895) recD2 3268324..3270690 (-) 2367 WP_034326475.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SK061_RS16900 (SK061_16900) - 3270766..3271386 (-) 621 WP_373870185.1 tetratricopeptide repeat protein -
  SK061_RS16905 (SK061_16905) mnmA 3271509..3272627 (-) 1119 WP_006637797.1 tRNA 2-thiouridine(34) synthase MnmA -
  SK061_RS16910 (SK061_16910) - 3272720..3273874 (-) 1155 WP_006637798.1 cysteine desulfurase family protein -
  SK061_RS16915 (SK061_16915) cymR 3273894..3274310 (-) 417 WP_006637799.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88817.23 Da        Isoelectric Point: 4.9345

>NTDB_id=907742 SK061_RS16895 WP_034326475.1 3268324..3270690(-) (recD2) [Bacillus sonorensis strain PMC204]
MEEASFLKGTVTAVIYHNETNLYTVLKVKVQETSESFDEKTVSVTGYFPAIFEDETYTFYGKTASHPKFGLQFQADHFKK
EVPTTKEGVIQYLSSDLFEGIGKKTAEEIVKKLGEGAINKILGDASVLYDVPKLSKKKADKLAALLQQHQGLEQIMISLS
EFGFGPQLSMKIYQVYESETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGRHAERIKAAILYTVEATCLQEGHTYI
ETKQLIIETQKLLNQSSDEEKVTEMDVADAIISLGEQKDLFIEDDRCYYPSLYYAEQSFAKRVQTIAEQTEYDDQFPESE
FLLALGELEERMQVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKDETFPFVLAAP
TGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIDGRLLIVDETSMLDIWLANQLFKAIPNRIQVIMVGDEDQLP
SVGPGQVLRDLLASNLIPSVRLTDIYRQAEGSSIVELAHDMKKGRLPENLTAPTKDRSFIRCRQQQIKEVVEKVVKNALQ
KGYSARDIQVLAPMYRGPAGINELNALLQDILNPPKPKGRELKYGDVVYRTGDKVLQLVNQPEHHVFNGDMGEIVSIFYA
KENTEKEDMAVVSFDGNEITITKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSKKFLILCG
EEEALEWGIKNRESSERQTSLQRRLHQAVHEEDEELLALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=907742 SK061_RS16895 WP_034326475.1 3268324..3270690(-) (recD2) [Bacillus sonorensis strain PMC204]
ATGGAAGAAGCATCCTTTCTGAAAGGAACGGTAACGGCCGTCATCTATCATAATGAAACAAACCTCTATACCGTACTGAA
AGTGAAGGTTCAGGAAACATCTGAATCATTTGATGAAAAAACCGTTTCTGTCACAGGGTACTTTCCGGCAATCTTTGAAG
ATGAAACGTATACTTTCTACGGAAAAACCGCCTCCCATCCGAAGTTTGGCCTGCAATTTCAAGCAGATCATTTTAAAAAA
GAAGTTCCGACGACAAAAGAAGGCGTCATCCAATATTTGTCGAGCGACCTATTTGAAGGCATCGGCAAAAAAACGGCGGA
AGAAATCGTCAAAAAGCTCGGGGAAGGCGCGATCAACAAGATTTTGGGAGACGCTTCCGTGCTTTATGATGTGCCAAAGC
TTTCAAAGAAAAAAGCGGATAAGCTTGCCGCTCTTCTTCAGCAGCATCAGGGGCTTGAGCAGATCATGATTTCCTTGAGC
GAGTTTGGCTTCGGGCCGCAGCTGTCCATGAAAATTTATCAAGTATATGAATCGGAAACGCTGGATAAAATCCGTGAAAA
TCCGTATCAGCTCGTCAAGGATGTCGAAGGAATCGGCTTTATTAAAGCGGATGAACTCGGCGGCAGAATGGGGATTTCCG
GCAGGCATGCGGAACGGATCAAAGCGGCGATTTTATATACGGTTGAAGCGACATGCCTTCAGGAAGGGCATACTTACATA
GAAACAAAACAGCTCATTATCGAGACGCAGAAGCTGCTGAACCAGTCGTCTGACGAAGAAAAAGTCACGGAAATGGATGT
GGCGGATGCGATCATTTCCCTAGGTGAACAGAAAGATCTGTTTATTGAAGACGACAGGTGCTATTATCCGTCGCTTTACT
ATGCTGAACAAAGCTTTGCCAAAAGAGTCCAGACGATCGCGGAACAAACCGAATACGATGACCAGTTTCCCGAATCGGAA
TTTTTGCTTGCTTTAGGCGAGCTTGAAGAACGAATGCAAGTCCAATACGCGCCAAGCCAAAAAGAAGCCATTCAAAAAGC
GCTGATGTCCCCGATGCTGCTTTTGACCGGAGGACCCGGCACGGGAAAAACGACAGTCATCAGGGGAATCGTCGAATTGT
ACAGCGAGCTGCACGGTTTAAGTTTAAATCCGGCTGATTATAAAAAGGATGAAACCTTTCCGTTTGTACTGGCTGCGCCG
ACGGGTAGAGCGGCCAAGCGGATGAGCGAATCGACGGGTCTTCCCGCTGTGACGATCCACAGGCTCCTCGGCTGGAACGG
AGCGGAAGGTTTTACACATGACGAAGATAACCCGATCGATGGGCGGCTGCTGATTGTCGATGAGACGAGCATGCTTGATA
TATGGCTTGCCAACCAATTATTCAAAGCGATTCCAAACCGGATTCAGGTTATCATGGTGGGAGATGAAGACCAGCTCCCG
TCTGTCGGACCGGGACAGGTGCTCAGGGATCTCCTTGCATCAAATCTCATTCCCTCGGTCAGATTAACCGATATTTACCG
GCAGGCAGAAGGCTCTTCAATCGTGGAATTGGCGCATGATATGAAAAAGGGGAGGCTGCCGGAAAATTTGACGGCCCCGA
CTAAAGACCGCTCATTTATCCGCTGCCGTCAGCAGCAAATTAAAGAAGTGGTTGAAAAAGTCGTCAAAAACGCATTGCAA
AAGGGCTATTCCGCCCGGGACATTCAAGTGCTTGCCCCGATGTACAGGGGTCCGGCGGGAATCAATGAATTAAATGCGCT
TTTGCAGGACATCCTCAATCCGCCAAAACCAAAAGGCAGGGAGCTAAAGTACGGGGATGTCGTCTACAGGACGGGCGACA
AGGTGCTCCAGCTTGTCAATCAGCCTGAGCATCATGTGTTCAACGGTGATATGGGCGAAATTGTTTCTATTTTTTACGCG
AAGGAAAATACGGAAAAAGAAGACATGGCTGTCGTTTCTTTTGACGGCAACGAGATCACAATTACAAAAAAAGATTTCAA
TCAGTTTACACATGCTTACTGCTGTTCGATTCACAAATCGCAGGGCAGCGAATTTCCGATTGTCATTCTTCCCGTCGTCA
AAAGCTATTACCGGATGCTGAGAAGAAATTTGCTTTATACGGCCATTACAAGAAGCAAAAAATTTCTCATTTTGTGCGGT
GAAGAGGAAGCGCTTGAATGGGGCATAAAAAATAGAGAATCCTCTGAAAGGCAGACATCTTTGCAGAGAAGGCTGCATCA
GGCGGTACATGAAGAGGACGAGGAGCTGCTGGCGCTCCAAAAAGAACTGCCTTTCAGCGTGTATGACGCCAACATCGGTA
TGGAAGGCATCACACCTTTTGACTTTATGGAAAAAGAGGCGGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(149-239)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-652)

AAA domain (AAA_30)

(336-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8RYE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

82.383

100

0.825