Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SK061_RS09775 Genome accession   NZ_CP139190
Coordinates   1902027..1902806 (+) Length   259 a.a.
NCBI ID   WP_006638180.1    Uniprot ID   A0A6I7F231
Organism   Bacillus sonorensis strain PMC204     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1897027..1907806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS09755 (SK061_09755) trmFO 1897725..1899029 (+) 1305 WP_006638184.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SK061_RS09760 (SK061_09760) xerC 1899096..1900010 (+) 915 WP_006638183.1 tyrosine recombinase XerC -
  SK061_RS09765 (SK061_09765) hslV 1900024..1900566 (+) 543 WP_006638182.1 ATP-dependent protease subunit HslV -
  SK061_RS09770 (SK061_09770) hslU 1900583..1901986 (+) 1404 WP_006638181.1 HslU--HslV peptidase ATPase subunit -
  SK061_RS09775 (SK061_09775) codY 1902027..1902806 (+) 780 WP_006638180.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SK061_RS09780 (SK061_09780) flgB 1903147..1903536 (+) 390 WP_006638179.1 flagellar basal body rod protein FlgB -
  SK061_RS09785 (SK061_09785) flgC 1903536..1903988 (+) 453 WP_006638178.1 flagellar basal body rod protein FlgC -
  SK061_RS09790 (SK061_09790) fliE 1904001..1904318 (+) 318 WP_006638177.1 flagellar hook-basal body complex protein FliE -
  SK061_RS09795 (SK061_09795) fliF 1904369..1905970 (+) 1602 WP_006638176.1 flagellar basal-body MS-ring/collar protein FliF -
  SK061_RS09800 (SK061_09800) fliG 1905984..1907000 (+) 1017 WP_029418507.1 flagellar motor switch protein FliG -
  SK061_RS09805 (SK061_09805) fliH 1906984..1907751 (+) 768 WP_034325767.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29087.45 Da        Isoelectric Point: 4.8196

>NTDB_id=907726 SK061_RS09775 WP_006638180.1 1902027..1902806(+) (codY) [Bacillus sonorensis strain PMC204]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=907726 SK061_RS09775 WP_006638180.1 1902027..1902806(+) (codY) [Bacillus sonorensis strain PMC204]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTCAAAGAAAT
GGCCGAAACGCTCCGCGACGTCATCGATTCAAACATTTTCGTTGTCAGCCGCAGAGGTAAGCTCCTCGGCTTCTCAATTA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAACGCCAGTTTCCTGAAGATTACACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCAAACCTGGATATTAACAGCGAATATACGGCGTTCCCTGTTGAAAACCGCGATCTTTTCCA
AGCGGGACTGACGACGATCGTACCGATTATCGGAGGAGGCGAAAGACTGGGAACATTGATTCTTTCACGCCTTCAGGAGA
AATTTGAAGATGATGATTTGATCCTTGCCGAATACGGCGCAACTGTTGTCGGAATGGAGATTCTCAGAGAAAAGGCCGAG
GAAATCGAAGAGGAAGCCCGCAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCATTATCATACAGTGAGCTTGAAGCGAT
TGAACATATCTTTGAAGAGCTTGACGGAAACGAAGGCCTGCTTGTCGCGAGTAAAATCGCCGACCGAGTCGGCATTACGC
GCTCCGTCATCGTGAATGCCTTGCGAAAACTCGAGAGCGCCGGTGTTATTGAATCCAGATCATTAGGGATGAAAGGCACA
TATATTAAAGTGCTCAACAACAAATTCCTCATGGAGCTTGAAAAACTGAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F231

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467