Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SK061_RS09745 Genome accession   NZ_CP139190
Coordinates   1894465..1895367 (+) Length   300 a.a.
NCBI ID   WP_006638186.1    Uniprot ID   A0A7Y8RX47
Organism   Bacillus sonorensis strain PMC204     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1889465..1900367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS09725 (SK061_09725) - 1890119..1891810 (+) 1692 WP_006638190.1 hypothetical protein -
  SK061_RS09730 (SK061_09730) - 1891807..1892085 (+) 279 WP_006638189.1 FlhB-like flagellar biosynthesis protein -
  SK061_RS09735 (SK061_09735) sucC 1892262..1893422 (+) 1161 WP_006638188.1 ADP-forming succinate--CoA ligase subunit beta -
  SK061_RS09740 (SK061_09740) sucD 1893441..1894343 (+) 903 WP_006638187.1 succinate--CoA ligase subunit alpha -
  SK061_RS09745 (SK061_09745) dprA 1894465..1895367 (+) 903 WP_006638186.1 DNA-processing protein DprA Machinery gene
  SK061_RS09750 (SK061_09750) topA 1895573..1897648 (+) 2076 WP_006638185.1 type I DNA topoisomerase -
  SK061_RS09755 (SK061_09755) trmFO 1897725..1899029 (+) 1305 WP_006638184.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SK061_RS09760 (SK061_09760) xerC 1899096..1900010 (+) 915 WP_006638183.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33176.31 Da        Isoelectric Point: 9.7386

>NTDB_id=907725 SK061_RS09745 WP_006638186.1 1894465..1895367(+) (dprA) [Bacillus sonorensis strain PMC204]
MNDQSELLILLRLYGILSPSLLSKWWKEDPSLSLSEETSHPLKKLSNEKISASSIRKLAEKELPKAKRLIKTYSDNGIGM
IAISSPDYPACLKTIHDPPPVLFLKGKKTFLNENRLIGIVGTRDPSSYGKSVVRHLAGELSNKDWTIVSGLAKGIDGLAH
KETIRTNGKTIGVIAGGFDHIYPRENRLLARHMAESHLLVSEHLPHIKPQKWHFPMRNRLISGLTEGIVVIQGKERSGSL
ITAYQALEQGREVFAVPGSIFDQNSQGPARLIQEGAKLVAGIDDILDELPGFKVQYTDPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=907725 SK061_RS09745 WP_006638186.1 1894465..1895367(+) (dprA) [Bacillus sonorensis strain PMC204]
ATGAATGATCAGAGCGAGCTGTTGATTTTGCTCCGCCTGTATGGAATCCTTTCGCCTTCCCTGTTATCCAAATGGTGGAA
GGAAGATCCTTCTTTATCGCTTTCAGAAGAAACATCCCATCCTCTAAAAAAGCTGTCAAATGAAAAGATCAGTGCAAGCT
CCATCCGTAAGCTCGCCGAAAAAGAGCTTCCAAAAGCAAAACGGCTGATAAAAACCTACAGCGATAACGGAATCGGCATG
ATCGCGATTTCGTCCCCTGACTATCCAGCCTGTCTGAAAACGATTCACGATCCGCCCCCCGTTCTTTTTTTAAAAGGAAA
GAAAACGTTTCTTAATGAAAACCGCCTTATCGGTATCGTGGGTACCCGAGATCCTTCATCATACGGAAAAAGCGTTGTCC
GCCACCTTGCCGGGGAGCTCAGCAATAAAGACTGGACGATCGTCAGCGGGCTCGCAAAAGGGATTGACGGTCTTGCCCAC
AAGGAGACCATCCGTACAAACGGAAAAACGATCGGCGTCATCGCCGGCGGATTCGACCACATATATCCCCGTGAAAACCG
TCTTCTTGCCCGGCACATGGCGGAAAGTCATTTGCTGGTGTCAGAGCACCTTCCCCATATAAAACCTCAAAAATGGCACT
TTCCGATGAGAAATCGGCTGATCAGCGGCTTAACCGAAGGAATCGTTGTCATTCAAGGCAAAGAAAGAAGCGGCTCGCTC
ATTACCGCCTATCAGGCGCTGGAACAGGGAAGAGAGGTATTTGCGGTGCCGGGTTCAATTTTTGACCAGAACTCCCAAGG
CCCGGCCAGATTGATCCAGGAAGGGGCGAAACTTGTAGCCGGCATTGATGACATTCTCGACGAACTTCCGGGTTTTAAAG
TGCAATATACGGATCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8RX47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

58.194

99.667

0.58