Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABMY55_RS16380 Genome accession   NZ_CP158143
Coordinates   3405142..3405798 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain FDN-11     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400142..3410798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMY55_RS16345 (ABMY55_16345) dcyD 3401022..3402008 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  ABMY55_RS16350 (ABMY55_16350) tcyL 3402023..3402691 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ABMY55_RS16355 (ABMY55_16355) tcyN 3402688..3403440 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABMY55_RS16360 (ABMY55_16360) sdiA 3403670..3404392 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  ABMY55_RS16365 (ABMY55_16365) yecF 3404459..3404683 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABMY55_RS16370 (ABMY55_16370) yecU 3404670..3404846 (-) 177 WP_000590347.1 protein YecU -
  ABMY55_RS16375 (ABMY55_16375) - 3404929..3405000 (-) 72 Protein_3184 transcriptional regulator -
  ABMY55_RS16380 (ABMY55_16380) letA 3405142..3405798 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABMY55_RS16385 (ABMY55_16385) uvrC 3405795..3407627 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ABMY55_RS16390 (ABMY55_16390) pgsA 3407684..3408232 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABMY55_RS16410 (ABMY55_16410) yecA 3408882..3409547 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=907646 ABMY55_RS16380 WP_000611335.1 3405142..3405798(+) (letA) [Escherichia coli strain FDN-11]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=907646 ABMY55_RS16380 WP_000611335.1 3405142..3405798(+) (letA) [Escherichia coli strain FDN-11]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTTGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486