Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   TM2_RS07925 Genome accession   NZ_AP025262
Coordinates   1557984..1558763 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain TM2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552984..1563763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS07905 (TM2_15100) trmFO 1553688..1554992 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  TM2_RS07910 (TM2_15110) xerC 1555055..1555972 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  TM2_RS07915 (TM2_15120) hslV 1555987..1556532 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  TM2_RS07920 (TM2_15130) hslU 1556549..1557949 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  TM2_RS07925 (TM2_15140) codY 1557984..1558763 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  TM2_RS07930 (TM2_15150) flgB 1559052..1559441 (+) 390 WP_236810445.1 flagellar basal body rod protein FlgB -
  TM2_RS07935 (TM2_15160) flgC 1559441..1559893 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  TM2_RS07940 (TM2_15170) fliE 1559905..1560222 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  TM2_RS07945 (TM2_15180) fliF 1560273..1561865 (+) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  TM2_RS07950 (TM2_15190) fliG 1561877..1562893 (+) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  TM2_RS07955 (TM2_15200) fliH 1562886..1563650 (+) 765 WP_048002828.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=90760 TM2_RS07925 WP_007499612.1 1557984..1558763(+) (codY) [Bacillus altitudinis strain TM2]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=90760 TM2_RS07925 WP_007499612.1 1557984..1558763(+) (codY) [Bacillus altitudinis strain TM2]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment