Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SFA27_RS04305 Genome accession   NZ_CP139139
Coordinates   969925..970578 (-) Length   217 a.a.
NCBI ID   WP_407296577.1    Uniprot ID   -
Organism   Chryseobacterium sp. HR92     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 964925..975578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFA27_RS04280 (SFA27_04265) - 965983..966234 (-) 252 WP_047378927.1 hypothetical protein -
  SFA27_RS04290 (SFA27_04275) der 966831..968141 (+) 1311 WP_047378925.1 ribosome biogenesis GTPase Der -
  SFA27_RS04295 (SFA27_04280) upp 968386..969036 (+) 651 WP_047378923.1 uracil phosphoribosyltransferase -
  SFA27_RS04300 (SFA27_04285) - 969038..969724 (-) 687 WP_407296575.1 alpha/beta fold hydrolase -
  SFA27_RS04305 (SFA27_04290) comF 969925..970578 (-) 654 WP_407296577.1 ComF family protein Machinery gene
  SFA27_RS04310 (SFA27_04295) - 970739..972217 (-) 1479 WP_264517052.1 helix-turn-helix domain-containing protein -
  SFA27_RS04315 (SFA27_04300) aceB 972344..973918 (+) 1575 WP_264517053.1 malate synthase A -
  SFA27_RS04320 (SFA27_04305) aceA 974038..975318 (+) 1281 WP_255816595.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25239.17 Da        Isoelectric Point: 7.1820

>NTDB_id=907342 SFA27_RS04305 WP_407296577.1 969925..970578(-) (comF) [Chryseobacterium sp. HR92]
MILDLLFPNRCIHCNRIIDPELLVCDLCFSQIYFTHYSYFENNPIKEKCSLLFPVENTFALLQFEEESLSRQIIHELKYK
GREKAGKILADWTTERLDFDHEKPDLLISVPLHPKKLKERGYNQLHLFTETLSSFYNIPFDHQLIKRNYYSKAQALKDKK
HRLEAVNTFSITKSVTGKHILLIDDVFTTGNTVSSVAWEILNAGNNKVSVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=907342 SFA27_RS04305 WP_407296577.1 969925..970578(-) (comF) [Chryseobacterium sp. HR92]
ATGATATTAGATTTATTGTTTCCCAACCGTTGCATCCACTGCAACAGAATTATTGATCCTGAACTTTTGGTGTGTGATCT
TTGTTTTAGCCAGATTTATTTCACCCATTATTCCTATTTTGAAAACAATCCGATCAAGGAAAAATGCAGCTTGCTTTTTC
CTGTTGAAAACACTTTTGCTTTACTGCAATTTGAAGAAGAAAGTTTAAGCCGGCAGATCATCCATGAACTAAAATACAAA
GGCCGGGAAAAAGCCGGAAAGATCCTTGCAGACTGGACAACAGAACGTCTGGATTTCGATCACGAAAAACCTGATTTACT
GATAAGCGTACCACTTCACCCAAAGAAACTTAAGGAACGGGGATACAATCAGCTTCATTTATTCACTGAAACATTATCTT
CATTTTATAACATCCCTTTTGACCATCAATTAATTAAACGAAATTACTATTCAAAAGCACAGGCTTTAAAAGATAAGAAA
CACAGATTGGAAGCCGTCAATACATTCTCTATCACAAAATCTGTTACAGGAAAACATATTCTTCTGATTGACGATGTTTT
TACCACAGGAAATACAGTTTCATCAGTTGCATGGGAGATTTTAAACGCAGGAAACAATAAAGTGAGTGTTTTGGTGATGG
CAATGGATGTCTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.389

99.539

0.512