Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SH598_RS12990 Genome accession   NZ_CP139086
Coordinates   2679030..2681234 (-) Length   734 a.a.
NCBI ID   WP_320562534.1    Uniprot ID   -
Organism   Bacillus velezensis strain YN-2A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2674030..2686234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS12955 (SH598_12955) - 2675103..2675831 (+) 729 WP_007408209.1 amino acid ABC transporter ATP-binding protein -
  SH598_RS12960 (SH598_12960) - 2675852..2676679 (+) 828 WP_007408208.1 transporter substrate-binding domain-containing protein -
  SH598_RS12965 (SH598_12965) - 2676736..2677386 (+) 651 WP_015240286.1 amino acid ABC transporter permease -
  SH598_RS12970 (SH598_12970) - 2677405..2678061 (+) 657 WP_015417903.1 amino acid ABC transporter permease -
  SH598_RS12975 (SH598_12975) - 2678097..2678228 (-) 132 WP_003152741.1 YrzQ family protein -
  SH598_RS12980 (SH598_12980) - 2678250..2678441 (-) 192 WP_003152738.1 hypothetical protein -
  SH598_RS12985 (SH598_12985) - 2678454..2678912 (-) 459 WP_015417904.1 PRC-barrel domain-containing protein -
  SH598_RS12990 (SH598_12990) recD2 2679030..2681234 (-) 2205 WP_320562534.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SH598_RS12995 (SH598_12995) - 2681428..2682048 (-) 621 WP_088461189.1 lipopolysaccharide assembly protein LapB -
  SH598_RS13000 (SH598_13000) mnmA 2682136..2683251 (-) 1116 WP_012118077.1 tRNA 2-thiouridine(34) synthase MnmA -
  SH598_RS13005 (SH598_13005) - 2683288..2684427 (-) 1140 WP_039254379.1 cysteine desulfurase family protein -
  SH598_RS13010 (SH598_13010) cymR 2684446..2684862 (-) 417 WP_003152730.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 81981.13 Da        Isoelectric Point: 5.6525

>NTDB_id=907177 SH598_RS12990 WP_320562534.1 2679030..2681234(-) (recD2) [Bacillus velezensis strain YN-2A]
MRPTHFTEKPPRILSSACNFRLNTLKKKFRPQKKGSFTIYQVICLKESEKKTAEEIVKKLGDGALNKILTDASVLYDVPK
MSKKKADKLAGELQRHQGLEQIMISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLS
GNHPERIKAAILYTIESTCLSEGHTYIETKQLIINTQTLLNQSAEGGRVTEMDAADGIIALGESKDIVIEGERCYFPSLY
YAEQNVAKRVLDIAAQTEYADQFPESEFLLALGELEERMNVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVEL
YSELHGVSLDPGDYKKDETFPVLLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLD
IWLASHLFKALPKHIQLIVVGDEDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAP
TKDRSFIRCNSSQIKEVVDQVVSNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGD
KILQLVNQPENNVFNGDIGEIVSIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVV
KGYYRMLRRNLLYTAITRAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIG
MEGITPFDFMEEKA

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=907177 SH598_RS12990 WP_320562534.1 2679030..2681234(-) (recD2) [Bacillus velezensis strain YN-2A]
ATGAGACCTACACATTTTACGGAAAAACCGCCACGCATCCTAAGTTCGGCCTGCAATTTCAGGCTGAACACTTTAAAAAA
GAAATTCCGACCACAAAAGAAGGGATCATTCACTATTTATCAAGTGATCTGTTTGAAGGAATCGGAAAAAAAAACGGCGG
AAGAAATCGTCAAAAAGCTCGGAGACGGCGCGCTCAATAAAATTCTGACGGATGCATCGGTGCTTTACGATGTGCCGAAA
ATGTCGAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTTGAGCAGATTATGATCTCTCTGAA
CCAATACGGTTTCGGGCCCCAGCTATCCATGAAAATATATCAGGCCTACGAAACGGAAACACTGGAGAAAATTCAGGAAA
ATCCTTATCAGCTTGTAAAAGACGTTGAAGGCATCGGCTTTGTGAAAGCTGACGAGCTGGGCGGAAAAATGGGTCTGTCA
GGAAACCACCCGGAGCGGATCAAAGCGGCTATCTTATATACAATTGAATCGACCTGTCTTTCAGAGGGCCATACGTACAT
AGAAACAAAGCAGCTGATAATCAATACGCAAACGCTCCTGAATCAGTCAGCTGAAGGCGGCCGCGTCACGGAAATGGATG
CGGCTGACGGCATCATCGCCCTCGGGGAGAGTAAGGATATCGTCATAGAAGGAGAACGCTGCTATTTTCCGTCCTTGTAT
TACGCCGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAAACGGAGTATGCCGATCAATTTCCTGAATCGGA
ATTTCTGCTTGCACTCGGTGAACTGGAAGAACGGATGAATGTTCAATACGCGCCAAGCCAAAAGGATGCCATTCAAAAAG
CGCTGTCTTCACCGATGCTTTTACTGACCGGAGGACCCGGGACGGGGAAAACGACCGTTATTAAAGGAATCGTGGAATTA
TACAGTGAACTGCACGGAGTATCGCTTGACCCCGGTGATTATAAAAAAGACGAGACGTTCCCGGTGCTGCTTGCCGCGCC
GACGGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCGGCTGTTACGATACACAGGCTGCTCGGCTGGAATG
GCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATAGAAGGGAAACTGATCATTATAGACGAAGCGAGTATGCTCGAT
ATCTGGCTCGCCAGCCATTTGTTTAAGGCGCTTCCTAAGCACATTCAGCTCATTGTCGTCGGTGATGAAGACCAGCTTCC
TTCAGTAGGACCGGGGCAGGTGCTCAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGCCTGACAGATATTTACC
GTCAGGCTGAAGGATCATCCATTGTGGAACTTGCGCATGATATGAAAAAAGGACTGCTTCCAAAGGGGCTGACCGCGCCG
ACAAAGGACCGCTCATTTATCCGCTGTAATTCTTCACAGATTAAAGAAGTCGTAGATCAGGTCGTCTCGAACGCGTTAAA
AAAGGGGTATACCTCCAGGGATATTCAAGTGCTGGCCCCGATGTACAGGGGAAAAGCGGGAATTAACGAGCTGAATATGC
TTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAGTTCGGTGATGTCGTCTACAGGACGGGCGAT
AAAATATTACAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGCGATATCGGCGAAATCGTATCCATTTTTTATGC
CAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGCAATGAAATCACCTTTACGAAAAAGGATTTCA
GCCAGTTTACCCACGCGTACTGCTGTTCCATTCATAAGTCGCAGGGGAGCGAATTCCCGATTGTCGTCCTGCCTGTCGTC
AAAGGCTACTATCGAATGCTCAGGAGAAATCTGCTTTATACCGCCATTACAAGGGCGAAAAAATTTCTGATTCTTTGCGG
AGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAAAAACAGGCTCACAG
AGCAGACTGAAGAGATGGATGCAGAACTGGCCGCCCTGCAAAAAGAGCTGCCGTTCAGTGTATATGATGCAAACATCGGA
ATGGAAGGCATCACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(618-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(96-186)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(531-601)

AAA domain (AAA_30)

(283-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

85.874

97.411

0.837