Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABMW40_RS28120 Genome accession   NZ_CP158049
Coordinates   6042546..6043142 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain 2-216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6037546..6048142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMW40_RS28100 (ABMW40_28085) aroK 6038677..6039195 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ABMW40_RS28105 (ABMW40_28090) pilQ 6039207..6041351 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  ABMW40_RS28110 (ABMW40_28095) comL/pilP 6041405..6041929 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ABMW40_RS28115 (ABMW40_28100) pilO 6041926..6042549 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABMW40_RS28120 (ABMW40_28105) pilN 6042546..6043142 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ABMW40_RS28125 (ABMW40_28110) pilM 6043142..6044206 (-) 1065 WP_282831476.1 type IV pilus assembly protein PilM Machinery gene
  ABMW40_RS28130 (ABMW40_28115) - 6044391..6046859 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=907120 ABMW40_RS28120 WP_003095839.1 6042546..6043142(-) (pilN) [Pseudomonas aeruginosa strain 2-216]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=907120 ABMW40_RS28120 WP_003095839.1 6042546..6043142(-) (pilN) [Pseudomonas aeruginosa strain 2-216]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369