Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABNG15_RS26935 Genome accession   NZ_CP158022
Coordinates   5768632..5769228 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain CI00795     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5763632..5774228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG15_RS26915 (ABNG15_26915) aroK 5764763..5765281 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ABNG15_RS26920 (ABNG15_26920) pilQ 5765293..5767437 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  ABNG15_RS26925 (ABNG15_26925) comL/pilP 5767491..5768015 (-) 525 WP_367086538.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ABNG15_RS26930 (ABNG15_26930) pilO 5768012..5768635 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABNG15_RS26935 (ABNG15_26935) pilN 5768632..5769228 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ABNG15_RS26940 (ABNG15_26940) pilM 5769228..5770292 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ABNG15_RS26945 (ABNG15_26945) - 5770477..5772948 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=906925 ABNG15_RS26935 WP_003095839.1 5768632..5769228(-) (pilN) [Pseudomonas aeruginosa strain CI00795]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=906925 ABNG15_RS26935 WP_003095839.1 5768632..5769228(-) (pilN) [Pseudomonas aeruginosa strain CI00795]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAAATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ATAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369