Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB39_RS02905 Genome accession   NZ_CP138935
Coordinates   561775..562914 (-) Length   379 a.a.
NCBI ID   WP_011125865.1    Uniprot ID   Q7V9V8
Organism   Prochlorococcus marinus str. LG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 556775..567914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB39_RS02885 crtD 557583..559082 (+) 1500 WP_011125869.1 C-3',4' desaturase CrtD -
  SIB39_RS02890 - 559071..559937 (-) 867 WP_011125868.1 prephenate/arogenate dehydrogenase -
  SIB39_RS02895 - 560098..561450 (+) 1353 WP_341271065.1 helicase -
  SIB39_RS02900 - 561507..561758 (+) 252 WP_011125866.1 DUF2839 domain-containing protein -
  SIB39_RS02905 recA 561775..562914 (-) 1140 WP_011125865.1 recombinase RecA Machinery gene
  SIB39_RS02910 - 563026..563802 (-) 777 WP_011125864.1 HAD family hydrolase -
  SIB39_RS02920 - 564041..565069 (-) 1029 WP_225866389.1 LdpA C-terminal domain-containing domain -
  SIB39_RS02925 - 565090..565548 (-) 459 WP_011125862.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB39_RS02930 rplC 565941..566600 (+) 660 WP_011125861.1 50S ribosomal protein L3 -
  SIB39_RS02935 rplD 566600..567235 (+) 636 WP_011125860.1 50S ribosomal protein L4 -
  SIB39_RS02940 - 567228..567536 (+) 309 WP_011125859.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40603.35 Da        Isoelectric Point: 8.2265

>NTDB_id=906025 SIB39_RS02905 WP_011125865.1 561775..562914(-) (recA) [Prochlorococcus marinus str. LG]
MSNEIKSISSSNSSCPPNEARSGERDKALSLVLGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLIRSSAVDLVV
VDSVAALTPRSEIEGEMGDHAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDMAEETNIVTRKGAWYSYEGDNIGQGR
DNTITWLEENSEAKEKIEKLVRQKLTEGSEVSANSMKPLASAARAANTPPVMKKISNAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=906025 SIB39_RS02905 WP_011125865.1 561775..562914(-) (recA) [Prochlorococcus marinus str. LG]
ATGTCAAACGAAATTAAGTCAATCTCATCTTCCAACTCATCCTGTCCTCCAAATGAAGCACGTTCTGGAGAAAGAGATAA
AGCTCTCAGCCTTGTACTAGGTCAAATAGAACGAAACTTTGGCAAAGGCTCCATCATGCGCTTAGGGGATGCTTCCAAAA
TGCGTGTGGAGACAATCTCTACTGGAGCACTGACTCTTGATCTTGCCTTAGGCGGTGGATATCCCAAAGGTAGGGTCGTA
GAAGTCTATGGTCCAGAAAGTTCTGGTAAAACAACGCTGACATTACATGCTATCGCCGAGGTTCAAAAACGGGGTGGAGT
AGCCGCTTTTGTTGATGCAGAACATGCTCTAGACCCTGTATATGCAGCATCTCTAGGAGTTGACATTGAAAACCTTTTGG
TCTCACAACCCGATACAGGAGAAATGGCGCTAGAGATTGTTGATCAATTAATTCGATCATCAGCTGTTGACCTTGTGGTT
GTTGATTCAGTAGCAGCACTCACGCCTCGATCAGAAATTGAAGGGGAAATGGGCGATCATGCAGTAGGTAGCCAAGCGAG
ATTAATGAGTCAAGCAATGCGAAAAATTACGGGGAATATAGGGAAATCAGGCTGTACTGTGATCTTTCTAAATCAATTAC
GACTCAAAATTGGAGTTACCTATGGAAACCCTGAAACGACTACAGGTGGGAATGCTCTAAAATTTTATGCCTCTGTGCGA
CTCGATATCAGGCGAATTCAAACCCTGAAAAGAGGCACAGAGGAATATGGGATACGTGCCAAAGTAAAGGTTGCAAAAAA
CAAAGTTGCTCCTCCATTTCGAATTGCTGAATTTGATATTTTATTTGGAAAAGGCATTAGCACATTAGGATGTCTACTTG
ATATGGCAGAAGAAACAAATATTGTCACCCGCAAAGGTGCTTGGTATAGCTATGAAGGAGATAATATAGGTCAAGGGCGA
GACAATACAATTACTTGGCTAGAAGAAAATTCAGAAGCAAAAGAGAAAATAGAAAAATTAGTTCGTCAAAAGTTAACCGA
AGGTTCAGAAGTGAGCGCTAATTCCATGAAACCTCTGGCATCAGCAGCTCGTGCAGCAAATACACCACCTGTCATGAAAA
AAATATCTAATGCTGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7V9V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.559

87.335

0.573
  recA Acinetobacter baumannii D1279779

65.217

84.96

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.302

90.765

0.538
  recA Vibrio cholerae strain A1552

59.302

90.765

0.538
  recA Neisseria gonorrhoeae MS11

59.13

91.029

0.538
  recA Neisseria gonorrhoeae strain FA1090

59.13

91.029

0.538
  recA Neisseria gonorrhoeae MS11

59.13

91.029

0.538
  recA Pseudomonas stutzeri DSM 10701

63.043

84.96

0.536
  recA Helicobacter pylori strain NCTC11637

59.172

89.182

0.528
  recA Helicobacter pylori 26695

59.172

89.182

0.528
  recA Ralstonia pseudosolanacearum GMI1000

64.309

82.058

0.528
  recA Streptococcus pneumoniae R6

58.754

88.918

0.522
  recA Streptococcus pneumoniae TIGR4

58.754

88.918

0.522
  recA Streptococcus pneumoniae Rx1

58.754

88.918

0.522
  recA Streptococcus pneumoniae D39

58.754

88.918

0.522
  recA Glaesserella parasuis strain SC1401

60.991

85.224

0.52
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.112

89.446

0.52
  recA Streptococcus mitis NCTC 12261

56.125

92.612

0.52
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

84.697

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.748

84.697

0.515
  recA Streptococcus mitis SK321

56.105

90.765

0.509
  recA Lactococcus lactis subsp. cremoris KW2

57.143

88.654

0.507
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.433

0.501
  recA Streptococcus mutans UA159

58.154

85.752

0.499
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.821

88.391

0.493
  recA Streptococcus pyogenes NZ131

56.575

86.28

0.488