Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ABK833_RS28900 Genome accession   NZ_CP157459
Coordinates   6181124..6181648 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa PA103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6176124..6186648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK833_RS28885 (ABK833_28860) aroB 6177240..6178346 (-) 1107 WP_019484454.1 3-dehydroquinate synthase -
  ABK833_RS28890 (ABK833_28865) aroK 6178396..6178914 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ABK833_RS28895 (ABK833_28870) pilQ 6178926..6181070 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  ABK833_RS28900 (ABK833_28875) comL/pilP 6181124..6181648 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ABK833_RS28905 (ABK833_28880) pilO 6181645..6182268 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABK833_RS28910 (ABK833_28885) pilN 6182265..6182861 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ABK833_RS28915 (ABK833_28890) pilM 6182861..6183925 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ABK833_RS28920 (ABK833_28895) - 6184110..6186581 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=905645 ABK833_RS28900 WP_003095836.1 6181124..6181648(-) (comL/pilP) [Pseudomonas aeruginosa PA103]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=905645 ABK833_RS28900 WP_003095836.1 6181124..6181648(-) (comL/pilP) [Pseudomonas aeruginosa PA103]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362