Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABLB99_RS00280 Genome accession   NZ_CP157447
Coordinates   61863..63128 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter nosocomialis strain XH1727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56863..68128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS00250 (ABLB99_00250) mutY 57031..58065 (-) 1035 WP_032011123.1 A/G-specific adenine glycosylase -
  ABLB99_RS00255 (ABLB99_00255) - 58207..58569 (-) 363 WP_002053765.1 HIT family protein -
  ABLB99_RS00260 (ABLB99_00260) - 58757..59494 (-) 738 WP_002053958.1 dienelactone hydrolase family protein -
  ABLB99_RS00265 (ABLB99_00265) - 59665..59823 (-) 159 WP_002053759.1 DUF1328 domain-containing protein -
  ABLB99_RS00270 (ABLB99_00270) - 60017..60475 (+) 459 WP_004711336.1 YcgN family cysteine cluster protein -
  ABLB99_RS00275 (ABLB99_00275) - 60585..61757 (+) 1173 WP_004885036.1 PQQ-dependent sugar dehydrogenase -
  ABLB99_RS00280 (ABLB99_00280) rarA 61863..63128 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  ABLB99_RS00285 (ABLB99_00285) - 63146..63982 (-) 837 WP_002054022.1 formate/nitrite transporter family protein -
  ABLB99_RS00290 (ABLB99_00290) - 64282..64485 (-) 204 WP_002053827.1 hypothetical protein -
  ABLB99_RS00295 (ABLB99_00295) purC 64679..65398 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ABLB99_RS00300 (ABLB99_00300) - 65435..66034 (-) 600 WP_079377873.1 lipoprotein-34 precursor (NlpB) -
  ABLB99_RS00305 (ABLB99_00305) dapA 66050..66943 (-) 894 WP_002054045.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ABLB99_RS00310 (ABLB99_00310) pncA 67273..67917 (+) 645 WP_151800054.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=905490 ABLB99_RS00280 WP_001285409.1 61863..63128(+) (rarA) [Acinetobacter nosocomialis strain XH1727]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=905490 ABLB99_RS00280 WP_001285409.1 61863..63128(+) (rarA) [Acinetobacter nosocomialis strain XH1727]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCTCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCGTTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCGGAAAGTGGTGATTTACTCACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTGGAAAAAGGAAAAATCACCTTAATAGGTGCGACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCGCGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACT
TTACTTAACAATGCACTTCAAAACGATAAATTCTTAAAAGAACGCTACATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTAAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCAGAAGTTGAAAATA
CCATTACCAATGCTGTGGTTGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCTTTTATTAAATCGATTCGTGGTAGTGATCCAGATGCTGCTCTGTACTGGATGGCTCGTATGCTCAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGCTGATTGCTGCCTCAGAAGATATTGGAAATTCGAATCCAAATGCGC
TATTGCTTGCTGGTGAATGTTTCCGTTCTGTACAGGCAGTTGGAATGCCTGAGGCGCGAATTATTTTGGGTCAAACCGCG
GTTTACCTAGCAACCAGCGCGAAAAGTAACAGTACTTATTTGGCGATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTGCCTTTACACTTGAGAAATGCACCGACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGCTGCAAGACTACTTACCACCTGAGTTGAAGGGAACTAAACTTTATGAGTCG
GCGAGAAACAAGCGTGAAGTTGAAGGTGAGCGCCTCCAGCAACGCCGATGGCAGCAGGAGCAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387