Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABLC00_RS18210 Genome accession   NZ_CP157432
Coordinates   3889685..3890950 (-) Length   421 a.a.
NCBI ID   WP_023188047.1    Uniprot ID   A0AA36K846
Organism   Acinetobacter nosocomialis strain XH1679     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3884685..3895950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS18180 (ABLC00_18180) pncA 3884897..3885541 (-) 645 WP_006582415.1 bifunctional nicotinamidase/pyrazinamidase -
  ABLC00_RS18185 (ABLC00_18185) dapA 3885871..3886764 (+) 894 WP_002054045.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ABLC00_RS18190 (ABLC00_18190) - 3886780..3887379 (+) 600 WP_002053789.1 hypothetical protein -
  ABLC00_RS18195 (ABLC00_18195) purC 3887416..3888135 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ABLC00_RS18200 (ABLC00_18200) - 3888330..3888533 (+) 204 WP_031995861.1 hypothetical protein -
  ABLC00_RS18205 (ABLC00_18205) - 3888832..3889668 (+) 837 WP_023188048.1 formate/nitrite transporter family protein -
  ABLC00_RS18210 (ABLC00_18210) rarA 3889685..3890950 (-) 1266 WP_023188047.1 replication-associated recombination protein A Machinery gene
  ABLC00_RS18215 (ABLC00_18215) - 3891056..3892228 (-) 1173 WP_031944185.1 PQQ-dependent sugar dehydrogenase -
  ABLC00_RS18220 (ABLC00_18220) - 3892338..3892796 (-) 459 WP_006581539.1 YcgN family cysteine cluster protein -
  ABLC00_RS18225 (ABLC00_18225) - 3892990..3893148 (+) 159 WP_002053759.1 DUF1328 domain-containing protein -
  ABLC00_RS18230 (ABLC00_18230) - 3893319..3894056 (+) 738 WP_000100775.1 dienelactone hydrolase family protein -
  ABLC00_RS18235 (ABLC00_18235) - 3894244..3894606 (+) 363 WP_002053765.1 HIT family protein -
  ABLC00_RS18240 (ABLC00_18240) mutY 3894749..3895783 (+) 1035 WP_004885042.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46901.63 Da        Isoelectric Point: 5.8354

>NTDB_id=905489 ABLC00_RS18210 WP_023188047.1 3889685..3890950(-) (rarA) [Acinetobacter nosocomialis strain XH1679]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQADKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGIKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=905489 ABLC00_RS18210 WP_023188047.1 3889685..3890950(-) (rarA) [Acinetobacter nosocomialis strain XH1679]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGACCTCCAGGCGTTG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCGATAGATCGTCCATTTGTAAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGATTTACTAACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATCACCTTAATAGGTGCGACCACTGAAAATCCGT
CTTTTGAAGTCAATAGTGCGCTTTTATCGCGCTGTCAGGTTTATACTTTAAACAGTTTAGACAGTGAAGCAATTCAGACC
TTACTCAACAACGCACTTCAAGCAGATAAATTCTTAAAAGAACGCTACATTCACATTGAAGAGTACGATGCTCTTTTACA
GTTTGCGGCAGGTGATGCCCGTAAAGCACTTAATTTACTAGACTTAATTGCAAGTACATTTGAGCCAGAAGTTGAAAATA
CCATTACCAATGCAGTGGTTGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCTTTTATTAAATCGATTCGTGGTAGTGATCCAGATGCTGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGCTGATTGCTGCCTCAGAAGATATTGGGAACTCGAATCCAAATGCGC
TATTGCTTGCAGGTGAATGTTTCCGCTCGGTACAGGCGGTGGGTATGCCTGAGGCGCGAATTATTTTGGGTCAAACCGCG
GTTTACCTAGCAACCAGCGCGAAAAGTAACAGTACTTACCTCGCGATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCGACCAAGCTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTACCACCTGAGTTGAAGGGAATCAAACTCTATGAGTCG
GCGAGAAACAAGCGTGAAGTTGAAGGTGAGCGCCTCCAGCAACGCCGATGGCAGCAGGAGCAATAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K846

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387