Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   SGQ78_RS07570 Genome accession   NZ_CP138859
Coordinates   1580758..1581057 (-) Length   99 a.a.
NCBI ID   WP_217654599.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1575758..1586057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ78_RS07545 (SGQ78_07545) gcvPA 1576970..1578316 (-) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SGQ78_RS07550 (SGQ78_07550) gcvT 1578336..1579427 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  SGQ78_RS07555 (SGQ78_07555) - 1579586..1580110 (-) 525 WP_001015122.1 shikimate kinase -
  SGQ78_RS07560 (SGQ78_07560) - 1580100..1580246 (-) 147 WP_001789879.1 hypothetical protein -
  SGQ78_RS07565 (SGQ78_07565) comGF 1580343..1580840 (-) 498 WP_029697681.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGQ78_RS07570 (SGQ78_07570) comGE 1580758..1581057 (-) 300 WP_217654599.1 competence protein ComGE Machinery gene
  SGQ78_RS07575 (SGQ78_07575) comGD 1581044..1581490 (-) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGQ78_RS07580 (SGQ78_07580) comGC 1581468..1581779 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SGQ78_RS07585 (SGQ78_07585) comGB 1581793..1582863 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGQ78_RS07590 (SGQ78_07590) comGA 1582835..1583809 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  SGQ78_RS07595 (SGQ78_07595) - 1583861..1584484 (-) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  SGQ78_RS07600 (SGQ78_07600) - 1584481..1584810 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SGQ78_RS07605 (SGQ78_07605) - 1584810..1585796 (-) 987 WP_000161315.1 ROK family glucokinase -
  SGQ78_RS07610 (SGQ78_07610) - 1585793..1585996 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11107.23 Da        Isoelectric Point: 9.9215

>NTDB_id=905224 SGQ78_RS07570 WP_217654599.1 1580758..1581057(-) (comGE) [Staphylococcus aureus strain 15]
MKSYKCKGTFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=905224 SGQ78_RS07570 WP_217654599.1 1580758..1581057(-) (comGE) [Staphylococcus aureus strain 15]
ATGAAAAGCTATAAGTGTAAAGGAACATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAATATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

85.965

100

0.99
  comGE Staphylococcus aureus N315

97.98

100

0.98