Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   UXQ90_RS05980 Genome accession   NZ_CP157300
Coordinates   1248050..1248823 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain BSN81     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1243050..1253823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXQ90_RS05960 (UXQ90_05960) trmFO 1243393..1244700 (+) 1308 WP_000195263.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  UXQ90_RS05965 (UXQ90_05965) xerC 1245118..1246014 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  UXQ90_RS05970 (UXQ90_05970) hslV 1246011..1246556 (+) 546 WP_310700513.1 ATP-dependent protease subunit HslV -
  UXQ90_RS05975 (UXQ90_05975) hslU 1246622..1248025 (+) 1404 WP_000379051.1 ATP-dependent protease ATPase subunit HslU -
  UXQ90_RS05980 (UXQ90_05980) codY 1248050..1248823 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  UXQ90_RS05985 (UXQ90_05985) - 1248874..1248966 (+) 93 WP_031788481.1 hypothetical protein -
  UXQ90_RS05990 (UXQ90_05990) rpsB 1249165..1249932 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  UXQ90_RS05995 (UXQ90_05995) - 1249966..1250079 (+) 114 WP_001791405.1 hypothetical protein -
  UXQ90_RS06000 (UXQ90_06000) tsf 1250114..1250995 (+) 882 WP_031894946.1 translation elongation factor Ts -
  UXQ90_RS06005 (UXQ90_06005) pyrH 1251132..1251854 (+) 723 WP_000057330.1 UMP kinase -
  UXQ90_RS06010 (UXQ90_06010) frr 1251873..1252427 (+) 555 WP_001280006.1 ribosome recycling factor -
  UXQ90_RS06015 (UXQ90_06015) - 1252800..1253570 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=904102 UXQ90_RS05980 WP_000055337.1 1248050..1248823(+) (codY) [Staphylococcus aureus strain BSN81]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=904102 UXQ90_RS05980 WP_000055337.1 1248050..1248823(+) (codY) [Staphylococcus aureus strain BSN81]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGCGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428