Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SCI76_RS17460 Genome accession   NZ_CP138621
Coordinates   3430432..3432789 (+) Length   785 a.a.
NCBI ID   WP_407544055.1    Uniprot ID   -
Organism   Priestia sp. HNGD-A6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3425432..3437789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI76_RS17440 cymR 3426789..3427205 (+) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -
  SCI76_RS17445 - 3427229..3428371 (+) 1143 WP_028411684.1 cysteine desulfurase family protein -
  SCI76_RS17450 mnmA 3428478..3429590 (+) 1113 WP_028411683.1 tRNA 2-thiouridine(34) synthase MnmA -
  SCI76_RS17455 - 3429748..3430407 (+) 660 WP_013085089.1 lipopolysaccharide assembly protein LapB -
  SCI76_RS17460 recD2 3430432..3432789 (+) 2358 WP_407544055.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SCI76_RS17465 - 3432931..3433122 (+) 192 WP_013059292.1 hypothetical protein -
  SCI76_RS17470 - 3433148..3433282 (+) 135 WP_013059291.1 YrzQ family protein -
  SCI76_RS17475 - 3433396..3434457 (+) 1062 WP_048019728.1 AI-2E family transporter -
  SCI76_RS17480 alaS 3434846..3437479 (+) 2634 WP_221831977.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88854.35 Da        Isoelectric Point: 5.1132

>NTDB_id=903685 SCI76_RS17460 WP_407544055.1 3430432..3432789(+) (recD2) [Priestia sp. HNGD-A6]
MNEELVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDELYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCHGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSIRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=903685 SCI76_RS17460 WP_407544055.1 3430432..3432789(+) (recD2) [Priestia sp. HNGD-A6]
ATGAACGAAGAACTAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTTTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTTAATGAAGATGAATTATACACATTTTACGGGGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAATTTCATGTTGAGCAATTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCAAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAATATTGTGGACGCTCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCCGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAGGCTTTAGTAACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGTTTTAGCAGGGCTGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAACCATCCTGATCGTTTGCGTGCAGGTATTTTATACGTGATTGAGCAAGAA
TGTAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTACGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCGCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCCCAAACGCAATAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTTTAGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGCATACAAACTGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACTGGACGCGCTGCTAAACGAATGAGCGAAGCGACCGGACTTCCGGCAGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGACCATAATGAGGAGAATCCAATTGACGGAAAGTTATTGATTG
TGGATGAAGTATCGATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAGTCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACCGGCAAGCGGAAGGGTCGTCGATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGCTGTCACGGACAGCACATCACGAATGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCAGTTTTCTTTGCCAAAGAAAATACCGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAACGAAGT
AACTTATACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCGCAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTCAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGT
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGGAATGAAGACAGCATTCGACAAAC
GAATTTACAGCCCCTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

AAA domain (AAA_30)

(344-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.811

99.618

0.636