Detailed information NTG0902991

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: ABI116_RS06315
• Genome accession: NZ_CP157214
• Coordinates: 1222096..1223013 (+)
• Length: 305 a.a.
• NCBI ID: WP_003232954.1
• Uniprot ID: A0A9W5LHY5
• Organism: Bacillus subtilis subsp. subtilis isolate FELIX_MS21
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1217096..1228013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABI116_RS06300 (ABI116_06300)	trpS	1217676..1218668 (-)	993	WP_003245134.1	tryptophan--tRNA ligase	-
ABI116_RS06305 (ABI116_06305)	oppA	1219412..1221049 (+)	1638	WP_003232957.1	oligopeptide ABC transporter substrate-binding protein OppA	-
ABI116_RS06310 (ABI116_06310)	oppB	1221157..1222092 (+)	936	WP_003245554.1	oligopeptide ABC transporter permease OppB	-
ABI116_RS06315 (ABI116_06315)	amiD	1222096..1223013 (+)	918	WP_003232954.1	oligopeptide ABC transporter permease OppC	Regulator
ABI116_RS06320 (ABI116_06320)	oppD	1223018..1224094 (+)	1077	WP_014906294.1	oligopeptide ABC transporter ATP-binding protein OppD	-
ABI116_RS06325 (ABI116_06325)	oppF	1224096..1225013 (+)	918	WP_003245567.1	oligopeptide ABC transporter ATP-binding protein OppF	-
ABI116_RS06330 (ABI116_06330)	yjbB	1225120..1226337 (+)	1218	WP_010886478.1	MFS transporter	-
ABI116_RS06335 (ABI116_06335)	yjbC	1226501..1227079 (+)	579	WP_003244921.1	GNAT family N-acetyltransferase	-
ABI116_RS06340 (ABI116_06340)	spx	1227260..1227655 (+)	396	WP_003245483.1	transcriptional regulator Spx	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33621.12 Da
• Isoelectric Point: 10.2873

>NTDB_id=902991 ABI116_RS06315 WP_003232954.1 1222096..1223013(+) (amiD) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide

• Length: 918 bp

>NTDB_id=902991 ABI116_RS06315 WP_003232954.1 1222096..1223013(+) (amiD) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (121-305)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-79)

3D structure

• AlphaFold DB: A0A9W5LHY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	35.922	100	0.364
amiD	Streptococcus thermophilus LMD-9	35.922	100	0.364