Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SGJ46_RS01620 Genome accession   NZ_CP138461
Coordinates   342805..343239 (+) Length   144 a.a.
NCBI ID   WP_177156094.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337805..348239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS01610 - 338320..342171 (+) 3852 WP_177156095.1 hypothetical protein -
  SGJ46_RS01615 - 342176..342811 (+) 636 WP_104473453.1 type IV pilin protein -
  SGJ46_RS01620 pilE 342805..343239 (+) 435 WP_177156094.1 type IV pilin protein Machinery gene
  SGJ46_RS01625 rpsP 343378..343635 (+) 258 WP_177156093.1 30S ribosomal protein S16 -
  SGJ46_RS01630 rimM 343654..344202 (+) 549 WP_104470239.1 ribosome maturation factor RimM -
  SGJ46_RS01635 trmD 344229..344978 (+) 750 WP_177156092.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SGJ46_RS01640 rplS 345152..345526 (+) 375 WP_003792460.1 50S ribosomal protein L19 -
  SGJ46_RS01645 - 345590..346375 (-) 786 Protein_317 esterase/lipase family protein -
  SGJ46_RS01650 - 346447..347418 (-) 972 WP_171431626.1 esterase/lipase family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15840.22 Da        Isoelectric Point: 8.9420

>NTDB_id=902914 SGJ46_RS01620 WP_177156094.1 342805..343239(+) (pilE) [Acinetobacter indicus strain CZH-5]
MVRQGFTLIELMIVIAIIAILAAIAYPSYQQYKIKVNRAEAQSEMMFIAERMNAYKGMNGSFAGATIAQIYGSTVTPKQG
TALYDLSFDAALTNATRWTLIAQPKAGTLQAGNGWICLNNQSEKYWAKGEARCDLSPNSTWSDK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=902914 SGJ46_RS01620 WP_177156094.1 342805..343239(+) (pilE) [Acinetobacter indicus strain CZH-5]
ATGGTAAGACAAGGGTTTACACTTATAGAACTTATGATTGTCATTGCGATTATTGCAATTTTAGCTGCTATTGCTTATCC
CTCTTATCAGCAATATAAAATTAAAGTAAATCGGGCAGAAGCACAATCAGAGATGATGTTCATTGCTGAAAGAATGAATG
CCTATAAAGGAATGAATGGTTCTTTTGCGGGGGCAACGATTGCACAAATATATGGATCAACAGTAACTCCCAAACAAGGC
ACTGCATTATATGATTTAAGCTTTGATGCTGCACTAACCAATGCAACCCGTTGGACTCTAATTGCTCAACCTAAGGCAGG
TACGTTACAAGCGGGCAATGGTTGGATTTGTTTAAACAATCAATCAGAGAAATATTGGGCAAAAGGCGAAGCGCGTTGTG
ACTTGTCGCCAAACTCTACCTGGTCCGATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

53.846

99.306

0.535
  comF Acinetobacter baylyi ADP1

49.65

99.306

0.493