Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ABH545_RS28810 Genome accession   NZ_CP157151
Coordinates   5383552..5384316 (+) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain UTAK-6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5378552..5389316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH545_RS28790 (ABH545_28790) acpT 5379505..5380093 (+) 589 Protein_5427 4'-phosphopantetheinyl transferase AcpT -
  ABH545_RS28795 (ABH545_28795) nikA 5380204..5381778 (+) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  ABH545_RS28800 (ABH545_28800) nikB 5381778..5382722 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  ABH545_RS28805 (ABH545_28805) nikC 5382719..5383552 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  ABH545_RS28810 (ABH545_28810) amiE 5383552..5384316 (+) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  ABH545_RS28815 (ABH545_28815) nikE 5384313..5385119 (+) 807 WP_042963083.1 nickel import ATP-binding protein NikE -
  ABH545_RS28820 (ABH545_28820) nikR 5385125..5385526 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  ABH545_RS28825 (ABH545_28825) - 5385725..5386471 (+) 747 WP_000839066.1 GntR family transcriptional regulator -
  ABH545_RS28830 (ABH545_28830) - 5386496..5386970 (+) 475 Protein_5435 PTS sugar transporter subunit IIA -
  ABH545_RS28835 (ABH545_28835) - 5386967..5387248 (+) 282 WP_000084022.1 PTS sugar transporter subunit IIB -
  ABH545_RS28840 (ABH545_28840) - 5387325..5388683 (+) 1359 WP_001298729.1 PTS galactitol transporter subunit IIC -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=902407 ABH545_RS28810 WP_001136236.1 5383552..5384316(+) (amiE) [Escherichia coli strain UTAK-6]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=902407 ABH545_RS28810 WP_001136236.1 5383552..5384316(+) (amiE) [Escherichia coli strain UTAK-6]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398