Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | R8N76_RS21880 | Genome accession | NZ_CP138336 |
| Coordinates | 4204414..4205193 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus cereus ATCC 14579 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4165573..4220638 | 4204414..4205193 | within | 0 |
Gene organization within MGE regions
Location: 4165573..4220638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8N76_RS21690 (R8N76_21680) | rsmB | 4165795..4167129 (+) | 1335 | WP_001249665.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| R8N76_RS21695 (R8N76_21685) | rlmN | 4167134..4168222 (+) | 1089 | WP_000450540.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| R8N76_RS21700 (R8N76_21690) | - | 4168227..4168979 (+) | 753 | WP_000648703.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| R8N76_RS21705 (R8N76_21695) | pknB | 4168988..4170961 (+) | 1974 | WP_000904747.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| R8N76_RS21710 (R8N76_21700) | rsgA | 4171208..4172089 (+) | 882 | WP_001113932.1 | ribosome small subunit-dependent GTPase A | - |
| R8N76_RS21715 (R8N76_21705) | rpe | 4172092..4172736 (+) | 645 | WP_000589959.1 | ribulose-phosphate 3-epimerase | - |
| R8N76_RS21720 (R8N76_21710) | - | 4172805..4173485 (+) | 681 | WP_002026234.1 | thiamine diphosphokinase | - |
| R8N76_RS21725 (R8N76_21715) | spoVM | 4173552..4173632 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| R8N76_RS21730 (R8N76_21720) | rpmB | 4173706..4173894 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| R8N76_RS21735 (R8N76_21725) | - | 4174271..4174633 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| R8N76_RS21740 (R8N76_21730) | - | 4174656..4176332 (+) | 1677 | WP_000027130.1 | DAK2 domain-containing protein | - |
| R8N76_RS21745 (R8N76_21735) | recG | 4176623..4178671 (+) | 2049 | WP_001000816.1 | ATP-dependent DNA helicase RecG | - |
| R8N76_RS21750 (R8N76_21740) | fapR | 4178760..4179353 (+) | 594 | WP_000747348.1 | transcription factor FapR | - |
| R8N76_RS21755 (R8N76_21745) | plsX | 4179350..4180342 (+) | 993 | WP_000684092.1 | phosphate acyltransferase PlsX | - |
| R8N76_RS21760 (R8N76_21750) | fabD | 4180357..4181301 (+) | 945 | WP_000515899.1 | ACP S-malonyltransferase | - |
| R8N76_RS21765 (R8N76_21755) | fabG | 4181301..4182041 (+) | 741 | WP_000911773.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| R8N76_RS21770 (R8N76_21760) | acpP | 4182111..4182344 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| R8N76_RS21775 (R8N76_21765) | rncS | 4182403..4183140 (+) | 738 | WP_001146875.1 | ribonuclease III | - |
| R8N76_RS21780 (R8N76_21770) | smc | 4183287..4186856 (+) | 3570 | WP_000478972.1 | chromosome segregation protein SMC | - |
| R8N76_RS21785 (R8N76_21775) | ftsY | 4186872..4187861 (+) | 990 | WP_000007656.1 | signal recognition particle-docking protein FtsY | - |
| R8N76_RS21790 (R8N76_21780) | - | 4187995..4188327 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| R8N76_RS21795 (R8N76_21785) | ffh | 4188340..4189689 (+) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| R8N76_RS21800 (R8N76_21790) | rpsP | 4189791..4190063 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| R8N76_RS21805 (R8N76_21795) | - | 4190078..4190305 (+) | 228 | WP_000737401.1 | KH domain-containing protein | - |
| R8N76_RS21810 (R8N76_21800) | rimM | 4190427..4190942 (+) | 516 | WP_000170278.1 | ribosome maturation factor RimM | - |
| R8N76_RS21815 (R8N76_21805) | trmD | 4190942..4191676 (+) | 735 | WP_000686903.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| R8N76_RS21820 (R8N76_21810) | rplS | 4191823..4192167 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| R8N76_RS21825 (R8N76_21815) | lepB | 4192269..4192820 (+) | 552 | WP_000711853.1 | signal peptidase I | - |
| R8N76_RS21830 (R8N76_21820) | ylqF | 4192841..4193731 (+) | 891 | WP_000236704.1 | ribosome biogenesis GTPase YlqF | - |
| R8N76_RS21835 (R8N76_21825) | - | 4193788..4194561 (+) | 774 | WP_001194268.1 | ribonuclease HII | - |
| R8N76_RS21840 (R8N76_21830) | sucC | 4194756..4195916 (+) | 1161 | WP_001020791.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| R8N76_RS21845 (R8N76_21835) | sucD | 4195936..4196838 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| R8N76_RS21850 (R8N76_21840) | dprA | 4196927..4197796 (+) | 870 | WP_000818060.1 | DNA-processing protein DprA | - |
| R8N76_RS21855 (R8N76_21845) | topA | 4197941..4200019 (+) | 2079 | WP_001286963.1 | type I DNA topoisomerase | - |
| R8N76_RS21860 (R8N76_21850) | trmFO | 4200068..4201372 (+) | 1305 | WP_000213003.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| R8N76_RS21865 (R8N76_21855) | xerC | 4201438..4202337 (+) | 900 | WP_001101243.1 | tyrosine recombinase XerC | - |
| R8N76_RS21870 (R8N76_21860) | hslV | 4202380..4202922 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| R8N76_RS21875 (R8N76_21865) | hslU | 4202945..4204336 (+) | 1392 | WP_000550078.1 | ATP-dependent protease ATPase subunit HslU | - |
| R8N76_RS21880 (R8N76_21870) | codY | 4204414..4205193 (+) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| R8N76_RS21885 (R8N76_21875) | rpsB | 4205541..4206242 (+) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| R8N76_RS21890 (R8N76_21880) | tsf | 4206346..4207233 (+) | 888 | WP_001018578.1 | translation elongation factor Ts | - |
| R8N76_RS21895 (R8N76_21885) | pyrH | 4207300..4208022 (+) | 723 | WP_000042668.1 | UMP kinase | - |
| R8N76_RS21900 (R8N76_21890) | frr | 4208025..4208582 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| R8N76_RS21905 (R8N76_21895) | uppS | 4208668..4209444 (+) | 777 | WP_000971296.1 | isoprenyl transferase | - |
| R8N76_RS21910 (R8N76_21900) | cdsA | 4209462..4210253 (+) | 792 | WP_000813592.1 | phosphatidate cytidylyltransferase | - |
| R8N76_RS21915 (R8N76_21905) | dxr | 4210277..4211419 (+) | 1143 | WP_000790373.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| R8N76_RS21920 (R8N76_21910) | rseP | 4211437..4212693 (+) | 1257 | WP_001090244.1 | RIP metalloprotease RseP | - |
| R8N76_RS21925 (R8N76_21915) | - | 4212803..4214503 (+) | 1701 | WP_000814302.1 | proline--tRNA ligase | - |
| R8N76_RS21930 (R8N76_21920) | - | 4214628..4218929 (+) | 4302 | WP_000060005.1 | PolC-type DNA polymerase III | - |
| R8N76_RS21935 (R8N76_21925) | rimP | 4219266..4219736 (+) | 471 | WP_000359096.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=901898 R8N76_RS21880 WP_000421290.1 4204414..4205193(+) (codY) [Bacillus cereus ATCC 14579]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=901898 R8N76_RS21880 WP_000421290.1 4204414..4205193(+) (codY) [Bacillus cereus ATCC 14579]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |