Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SC043_RS01180 Genome accession   NZ_CP138309
Coordinates   209528..210316 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis strain B26     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 204528..215316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC043_RS01155 (SC043_01155) - 204897..205688 (+) 792 WP_010905159.1 DNA/RNA non-specific endonuclease -
  SC043_RS01160 (SC043_01160) - 205853..206062 (+) 210 WP_010905160.1 hypothetical protein -
  SC043_RS01165 (SC043_01165) - 206074..206313 (+) 240 WP_010905161.1 hypothetical protein -
  SC043_RS01170 (SC043_01170) - 206509..208092 (+) 1584 WP_010905162.1 APC family permease -
  SC043_RS01175 (SC043_01175) - 208161..209375 (+) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  SC043_RS01180 (SC043_01180) codY 209528..210316 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SC043_RS01185 (SC043_01185) gatC 210825..211130 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SC043_RS01190 (SC043_01190) gatA 211130..212590 (+) 1461 WP_010905164.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SC043_RS01195 (SC043_01195) - 212594..213196 (+) 603 WP_010905165.1 NUDIX hydrolase N-terminal domain-containing protein -
  SC043_RS01200 (SC043_01200) gatB 213236..214669 (+) 1434 WP_010905166.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=901689 SC043_RS01180 WP_003129722.1 209528..210316(+) (codY) [Lactococcus lactis strain B26]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=901689 SC043_RS01180 WP_003129722.1 209528..210316(+) (codY) [Lactococcus lactis strain B26]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462