Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SA286_RS07885 Genome accession   NZ_CP137888
Coordinates   1564287..1565066 (+) Length   259 a.a.
NCBI ID   WP_041108981.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ECC22     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559287..1570066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA286_RS07865 (SA286_07865) trmFO 1559991..1561295 (+) 1305 WP_324657918.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SA286_RS07870 (SA286_07870) xerC 1561358..1562275 (+) 918 WP_039166693.1 tyrosine recombinase XerC -
  SA286_RS07875 (SA286_07875) hslV 1562290..1562835 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  SA286_RS07880 (SA286_07880) hslU 1562852..1564252 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  SA286_RS07885 (SA286_07885) codY 1564287..1565066 (+) 780 WP_041108981.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SA286_RS07890 (SA286_07890) flgB 1565357..1565746 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  SA286_RS07895 (SA286_07895) flgC 1565746..1566198 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  SA286_RS07900 (SA286_07900) fliE 1566210..1566527 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  SA286_RS07905 (SA286_07905) fliF 1566578..1568170 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  SA286_RS07910 (SA286_07910) fliG 1568182..1569198 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  SA286_RS07915 (SA286_07915) fliH 1569191..1569955 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29003.26 Da        Isoelectric Point: 4.7176

>NTDB_id=901033 SA286_RS07885 WP_041108981.1 1564287..1565066(+) (codY) [Bacillus altitudinis strain ECC22]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=901033 SA286_RS07885 WP_041108981.1 1564287..1565066(+) (codY) [Bacillus altitudinis strain ECC22]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTGATCCTTTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTAGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCCCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467