Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   HK937_RS06995 Genome accession   NZ_CP137883
Coordinates   1361178..1361693 (-) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter jejuni subsp. jejuni strain P4549     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1356178..1366693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK937_RS06980 (HK937_0006980) - 1356283..1358097 (-) 1815 WP_318856508.1 motility associated factor glycosyltransferase family protein -
  HK937_RS06985 (HK937_0006985) - 1358094..1359917 (-) 1824 WP_318856509.1 motility associated factor glycosyltransferase family protein -
  HK937_RS06990 (HK937_0006990) - 1359928..1361178 (-) 1251 WP_002817246.1 DUF2920 family protein -
  HK937_RS06995 (HK937_0006995) ctsG 1361178..1361693 (-) 516 WP_002780549.1 type II secretion system protein Machinery gene
  HK937_RS07000 (HK937_0007000) tsaD 1361697..1362704 (-) 1008 WP_224385827.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  HK937_RS07005 (HK937_0007005) - 1362701..1364095 (-) 1395 WP_044259041.1 M99 family carboxypeptidase catalytic domain-containing protein -
  HK937_RS07010 (HK937_0007010) dxr 1364097..1365167 (-) 1071 WP_002869325.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  HK937_RS07015 (HK937_0007015) cdsA 1365164..1365889 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  HK937_RS07020 (HK937_0007020) - 1365898..1366236 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=900963 HK937_RS06995 WP_002780549.1 1361178..1361693(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain P4549]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=900963 HK937_RS06995 WP_002780549.1 1361178..1361693(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain P4549]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918