Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DIGPMPBA_RS06285 Genome accession   NZ_CP137824
Coordinates   1309448..1311262 (-) Length   604 a.a.
NCBI ID   WP_173692928.1    Uniprot ID   -
Organism   [Clostridium] scindens strain JCM10419 (Y1113)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304448..1316262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIGPMPBA_RS06250 (DIGPMPBA_01248) - 1304511..1304849 (-) 339 WP_173692933.1 PadR family transcriptional regulator -
  DIGPMPBA_RS06255 (DIGPMPBA_01249) - 1305151..1306377 (+) 1227 WP_173692932.1 argininosuccinate synthase -
  DIGPMPBA_RS06260 (DIGPMPBA_01250) - 1306447..1307412 (-) 966 WP_173692931.1 dipeptidase -
  DIGPMPBA_RS06265 (DIGPMPBA_01251) - 1307516..1308259 (+) 744 WP_173692930.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DIGPMPBA_RS06270 (DIGPMPBA_01252) - 1308294..1308476 (+) 183 WP_004607016.1 hypothetical protein -
  DIGPMPBA_RS06275 (DIGPMPBA_01253) - 1308492..1308749 (+) 258 WP_025644413.1 spore coat protein -
  DIGPMPBA_RS06280 (DIGPMPBA_01254) - 1308824..1309435 (-) 612 WP_173692929.1 HD domain-containing protein -
  DIGPMPBA_RS06285 (DIGPMPBA_01255) rcrQ 1309448..1311262 (-) 1815 WP_173692928.1 ABC transporter ATP-binding protein Regulator
  DIGPMPBA_RS06290 (DIGPMPBA_01256) - 1311264..1313609 (-) 2346 WP_173692927.1 ABC transporter ATP-binding protein -
  DIGPMPBA_RS06295 (DIGPMPBA_01257) - 1313631..1314134 (-) 504 WP_025644416.1 MarR family winged helix-turn-helix transcriptional regulator -
  DIGPMPBA_RS06300 (DIGPMPBA_01258) dtd 1314338..1314784 (-) 447 WP_173692926.1 D-aminoacyl-tRNA deacylase -
  DIGPMPBA_RS06305 (DIGPMPBA_01259) - 1314785..1315237 (-) 453 WP_173692925.1 GNAT family N-acetyltransferase -
  DIGPMPBA_RS06310 (DIGPMPBA_01260) - 1315268..1315753 (-) 486 WP_173692924.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67231.11 Da        Isoelectric Point: 7.9873

>NTDB_id=900843 DIGPMPBA_RS06285 WP_173692928.1 1309448..1311262(-) (rcrQ) [[Clostridium] scindens strain JCM10419 (Y1113)]
MPRRGPGHGPMPGEKAKDFKGTMKKLMGYMGKYKIALLFVVIFAIGSTIFNIVGPKILGKATTEIFTGLVGKISGGSGID
FTKIGRILATLLCLYLCSALFSFIQGYIMTGVSQKLTYRMRREISEKISRLPMNYFDKMTHGEILSRITNDVDTLSMSLN
QSATQVITSVTTIIGVLIMMLSISPLMTVIALLILPLSMGLISVIVKRSQKFFKSQQRYLGHVNGQVEEVYGGHSIVKAF
NKEKDVIAAFDRDNEILYQSAWKSQFLSGMMMPIMQFVGNLGYVAVVILGGYLAIKKTIEVGDIQSFIQYVRSFTQPIQQ
VAQVANMLQSTAAASERVFEFLEEPEEDQTVPDAVALEGLEGRVEFDHVHFGYNPDHIIINDFSAKVEPGQKIAIVGPTG
AGKTIMVKLLMRFYDVNSGAIKVDGHDIRDFNRSELRQMFGMVLQDTWLFKGSIEDNIRYGKLDATHEEVVEAAKAAHVH
RFVQTLPGGYRMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAMDNLMRGRTSFIIAHRLS
TIRDADLILVMKDGDIVEQGTHEELLARNGFYADLYNSQFERSA

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=900843 DIGPMPBA_RS06285 WP_173692928.1 1309448..1311262(-) (rcrQ) [[Clostridium] scindens strain JCM10419 (Y1113)]
ATGCCAAGAAGAGGTCCGGGACATGGTCCGATGCCTGGAGAGAAGGCAAAGGACTTTAAAGGCACTATGAAAAAATTGAT
GGGCTATATGGGGAAATATAAGATTGCCCTGCTCTTTGTGGTCATATTTGCCATCGGCAGTACCATTTTCAATATCGTAG
GCCCTAAGATTCTTGGAAAGGCCACGACAGAAATATTTACCGGCCTGGTAGGCAAGATATCCGGGGGAAGCGGAATTGAT
TTCACAAAGATCGGAAGAATTCTGGCGACATTGCTCTGCCTGTACTTATGCAGCGCCTTGTTCTCGTTTATCCAGGGATA
CATCATGACGGGCGTATCCCAGAAACTGACCTACCGGATGAGAAGAGAGATCTCCGAGAAGATCAGCCGGCTGCCAATGA
ACTATTTTGATAAGATGACCCACGGAGAGATCCTGTCACGCATCACCAATGACGTGGATACCCTGAGCATGAGCTTGAAC
CAGAGCGCGACACAGGTAATCACCTCGGTGACGACGATCATCGGAGTGCTGATCATGATGCTCAGCATCAGCCCGCTGAT
GACGGTGATCGCCCTGTTGATCCTTCCGCTGTCCATGGGGCTGATCTCTGTGATCGTCAAGCGCTCCCAGAAGTTCTTCA
AAAGCCAGCAGAGGTACCTGGGCCATGTCAATGGGCAGGTGGAAGAAGTGTACGGCGGACATAGCATCGTAAAGGCATTC
AATAAGGAGAAAGACGTGATCGCGGCATTTGACCGGGACAATGAGATCCTCTACCAGTCTGCATGGAAGTCCCAGTTCCT
CTCAGGAATGATGATGCCTATCATGCAGTTTGTTGGAAATCTTGGCTATGTGGCTGTAGTCATTCTTGGTGGCTACCTCG
CGATCAAGAAGACGATAGAAGTAGGCGATATCCAGTCATTTATCCAATACGTAAGAAGTTTTACCCAGCCGATCCAGCAG
GTAGCGCAGGTGGCCAACATGCTTCAGTCCACGGCAGCAGCTTCCGAGCGCGTGTTCGAGTTCCTGGAAGAGCCGGAAGA
AGACCAGACGGTGCCGGATGCAGTGGCTTTGGAAGGCCTGGAAGGGCGTGTGGAATTTGACCATGTGCATTTCGGATATA
ATCCGGATCATATCATTATCAATGATTTTAGCGCCAAGGTAGAGCCTGGGCAGAAGATTGCCATCGTCGGTCCTACCGGA
GCCGGCAAGACCATCATGGTCAAGCTGCTGATGCGGTTCTATGACGTCAACAGCGGCGCCATCAAGGTAGACGGCCATGA
TATCCGTGACTTTAACCGCAGCGAGCTGCGCCAGATGTTCGGCATGGTACTGCAGGATACCTGGCTGTTTAAGGGGAGCA
TTGAAGACAATATCCGCTATGGCAAGCTGGACGCTACCCATGAAGAGGTGGTCGAGGCTGCCAAGGCTGCCCATGTACAC
CGTTTTGTACAGACGCTGCCGGGAGGCTATCGAATGGAACTGAACGAAGAGGCAAGCAATGTGTCCCAGGGACAGAAGCA
GCTTCTGACTATTGCCAGGGCAATTCTGGCGGATCCGAAGATTCTGATCCTTGATGAGGCAACCAGTTCCGTAGATACCC
GTACGGAAGTCCGGATTCAGAAGGCGATGGATAATCTGATGCGTGGCAGGACCAGCTTCATTATTGCACACCGCCTCTCA
ACCATCCGCGACGCAGACCTGATCCTTGTCATGAAAGACGGAGATATCGTCGAGCAGGGTACCCATGAAGAACTGCTGGC
AAGAAACGGCTTCTATGCGGATCTTTATAACTCTCAGTTTGAAAGAAGCGCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-317)

ABC transporter (ABC_tran)

(381-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.602

96.192

0.487