Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OBDPFMHD_RS06130 Genome accession   NZ_CP137823
Coordinates   1279960..1281774 (+) Length   604 a.a.
NCBI ID   WP_173692928.1    Uniprot ID   -
Organism   [Clostridium] scindens strain JCM10420 (M-18)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274960..1286774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBDPFMHD_RS06105 (OBDPFMHD_01218) - 1275469..1275954 (+) 486 WP_173692924.1 HD domain-containing protein -
  OBDPFMHD_RS06110 (OBDPFMHD_01219) - 1275985..1276437 (+) 453 WP_173692925.1 GNAT family N-acetyltransferase -
  OBDPFMHD_RS06115 (OBDPFMHD_01220) dtd 1276438..1276884 (+) 447 WP_173692926.1 D-aminoacyl-tRNA deacylase -
  OBDPFMHD_RS06120 (OBDPFMHD_01221) - 1277088..1277591 (+) 504 WP_025644416.1 MarR family winged helix-turn-helix transcriptional regulator -
  OBDPFMHD_RS06125 (OBDPFMHD_01222) - 1277613..1279958 (+) 2346 WP_173692927.1 ABC transporter ATP-binding protein -
  OBDPFMHD_RS06130 (OBDPFMHD_01223) rcrQ 1279960..1281774 (+) 1815 WP_173692928.1 ABC transporter ATP-binding protein Regulator
  OBDPFMHD_RS06135 (OBDPFMHD_01224) - 1281787..1282398 (+) 612 WP_173692929.1 HD domain-containing protein -
  OBDPFMHD_RS06140 (OBDPFMHD_01225) - 1282473..1282730 (-) 258 WP_025644413.1 spore coat protein -
  OBDPFMHD_RS06145 (OBDPFMHD_01226) - 1282746..1282928 (-) 183 WP_004607016.1 hypothetical protein -
  OBDPFMHD_RS06150 (OBDPFMHD_01227) - 1282963..1283706 (-) 744 WP_173692930.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  OBDPFMHD_RS06155 (OBDPFMHD_01228) - 1283810..1284775 (+) 966 WP_173692931.1 dipeptidase -
  OBDPFMHD_RS06160 (OBDPFMHD_01229) - 1284845..1286071 (-) 1227 WP_173692932.1 argininosuccinate synthase -
  OBDPFMHD_RS06165 (OBDPFMHD_01230) - 1286373..1286711 (+) 339 WP_173692933.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67231.11 Da        Isoelectric Point: 7.9873

>NTDB_id=900825 OBDPFMHD_RS06130 WP_173692928.1 1279960..1281774(+) (rcrQ) [[Clostridium] scindens strain JCM10420 (M-18)]
MPRRGPGHGPMPGEKAKDFKGTMKKLMGYMGKYKIALLFVVIFAIGSTIFNIVGPKILGKATTEIFTGLVGKISGGSGID
FTKIGRILATLLCLYLCSALFSFIQGYIMTGVSQKLTYRMRREISEKISRLPMNYFDKMTHGEILSRITNDVDTLSMSLN
QSATQVITSVTTIIGVLIMMLSISPLMTVIALLILPLSMGLISVIVKRSQKFFKSQQRYLGHVNGQVEEVYGGHSIVKAF
NKEKDVIAAFDRDNEILYQSAWKSQFLSGMMMPIMQFVGNLGYVAVVILGGYLAIKKTIEVGDIQSFIQYVRSFTQPIQQ
VAQVANMLQSTAAASERVFEFLEEPEEDQTVPDAVALEGLEGRVEFDHVHFGYNPDHIIINDFSAKVEPGQKIAIVGPTG
AGKTIMVKLLMRFYDVNSGAIKVDGHDIRDFNRSELRQMFGMVLQDTWLFKGSIEDNIRYGKLDATHEEVVEAAKAAHVH
RFVQTLPGGYRMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAMDNLMRGRTSFIIAHRLS
TIRDADLILVMKDGDIVEQGTHEELLARNGFYADLYNSQFERSA

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=900825 OBDPFMHD_RS06130 WP_173692928.1 1279960..1281774(+) (rcrQ) [[Clostridium] scindens strain JCM10420 (M-18)]
ATGCCAAGAAGAGGTCCGGGACATGGTCCGATGCCTGGAGAGAAGGCAAAGGACTTTAAAGGCACTATGAAAAAATTGAT
GGGCTATATGGGGAAATATAAGATTGCCCTGCTCTTTGTGGTCATATTTGCCATCGGCAGTACCATTTTCAATATCGTAG
GCCCTAAGATTCTTGGAAAGGCCACGACAGAAATATTTACCGGCCTGGTAGGCAAGATATCCGGGGGAAGCGGAATTGAT
TTCACAAAGATCGGAAGAATTCTGGCGACATTGCTCTGCCTGTACTTATGCAGCGCCTTGTTCTCGTTTATCCAGGGATA
CATCATGACGGGCGTATCCCAGAAACTGACCTACCGGATGAGAAGAGAGATCTCCGAGAAGATCAGCCGGCTGCCAATGA
ACTATTTTGATAAGATGACCCACGGAGAGATCCTGTCACGCATCACCAATGACGTGGATACCCTGAGCATGAGCTTGAAC
CAGAGCGCGACACAGGTAATCACCTCGGTGACGACGATCATCGGAGTGCTGATCATGATGCTCAGCATCAGCCCGCTGAT
GACGGTGATCGCCCTGTTGATCCTTCCGCTGTCCATGGGGCTGATCTCTGTGATCGTCAAGCGCTCCCAGAAGTTCTTCA
AAAGCCAGCAGAGGTACCTGGGCCATGTCAATGGGCAGGTGGAAGAAGTGTACGGCGGACATAGCATCGTAAAGGCATTC
AATAAGGAGAAAGACGTGATCGCGGCATTTGACCGGGACAATGAGATCCTCTACCAGTCTGCATGGAAGTCCCAGTTCCT
CTCAGGAATGATGATGCCTATCATGCAGTTTGTTGGAAATCTTGGCTATGTGGCTGTAGTCATTCTTGGTGGCTACCTCG
CGATCAAGAAGACGATAGAAGTAGGCGATATCCAGTCATTTATCCAATACGTAAGAAGTTTTACCCAGCCGATCCAGCAG
GTAGCGCAGGTGGCCAACATGCTTCAGTCCACGGCAGCAGCTTCCGAGCGCGTGTTCGAGTTCCTGGAAGAGCCGGAAGA
AGACCAGACGGTGCCGGATGCAGTGGCTTTGGAAGGCCTGGAAGGGCGTGTGGAATTTGACCATGTGCATTTCGGATATA
ATCCGGATCATATCATTATCAATGATTTTAGCGCCAAGGTAGAGCCTGGGCAGAAGATTGCCATCGTCGGTCCTACCGGA
GCCGGCAAGACCATCATGGTCAAGCTGCTGATGCGGTTCTATGACGTCAACAGCGGCGCCATCAAGGTAGACGGCCATGA
TATCCGTGACTTTAACCGCAGCGAGCTGCGCCAGATGTTCGGCATGGTACTGCAGGATACCTGGCTGTTTAAGGGGAGCA
TTGAAGACAATATCCGCTATGGCAAGCTGGACGCTACCCATGAAGAGGTGGTCGAGGCTGCCAAGGCTGCCCATGTACAC
CGTTTTGTACAGACGCTGCCGGGAGGCTATCGAATGGAACTGAACGAAGAGGCAAGCAATGTGTCCCAGGGACAGAAGCA
GCTTCTGACTATTGCCAGGGCAATTCTGGCGGATCCGAAGATTCTGATCCTTGATGAGGCAACCAGTTCCGTAGATACCC
GTACGGAAGTCCGGATTCAGAAGGCGATGGATAATCTGATGCGTGGCAGGACCAGCTTCATTATTGCACACCGCCTCTCA
ACCATCCGCGACGCAGACCTGATCCTTGTCATGAAAGACGGAGATATCGTCGAGCAGGGTACCCATGAAGAACTGCTGGC
AAGAAACGGCTTCTATGCGGATCTTTATAACTCTCAGTTTGAAAGAAGCGCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-317)

ABC transporter (ABC_tran)

(381-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.602

96.192

0.487