Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CLBADJHJ_RS05440 Genome accession   NZ_CP137818
Coordinates   1160053..1161867 (+) Length   604 a.a.
NCBI ID   WP_220430952.1    Uniprot ID   -
Organism   [Clostridium] scindens strain MO32     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1155053..1166867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLBADJHJ_RS05415 (CLBADJHJ_01093) - 1155562..1156047 (+) 486 WP_303949309.1 HD domain-containing protein -
  CLBADJHJ_RS05420 (CLBADJHJ_01094) - 1156078..1156530 (+) 453 WP_025644421.1 GNAT family N-acetyltransferase -
  CLBADJHJ_RS05425 (CLBADJHJ_01095) dtd 1156531..1156977 (+) 447 WP_220430950.1 D-aminoacyl-tRNA deacylase -
  CLBADJHJ_RS05430 (CLBADJHJ_01096) - 1157181..1157684 (+) 504 WP_025644416.1 MarR family winged helix-turn-helix transcriptional regulator -
  CLBADJHJ_RS05435 (CLBADJHJ_01097) - 1157706..1160051 (+) 2346 WP_303946407.1 ABC transporter transmembrane domain-containing protein -
  CLBADJHJ_RS05440 (CLBADJHJ_01098) rcrQ 1160053..1161867 (+) 1815 WP_220430952.1 ABC transporter ATP-binding protein Regulator
  CLBADJHJ_RS05445 (CLBADJHJ_01099) - 1161880..1162491 (+) 612 WP_173692929.1 HD domain-containing protein -
  CLBADJHJ_RS05450 (CLBADJHJ_01100) - 1162566..1162823 (-) 258 WP_025644413.1 spore coat protein -
  CLBADJHJ_RS05455 (CLBADJHJ_01101) - 1162839..1163021 (-) 183 WP_004607016.1 hypothetical protein -
  CLBADJHJ_RS05460 (CLBADJHJ_01102) - 1163056..1163799 (-) 744 WP_303946425.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  CLBADJHJ_RS05465 (CLBADJHJ_01103) - 1163903..1164868 (+) 966 WP_256183678.1 dipeptidase -
  CLBADJHJ_RS05470 (CLBADJHJ_01104) - 1164938..1166164 (-) 1227 WP_173692932.1 argininosuccinate synthase -
  CLBADJHJ_RS05475 (CLBADJHJ_01105) - 1166466..1166804 (+) 339 WP_173692933.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67219.06 Da        Isoelectric Point: 7.9873

>NTDB_id=900783 CLBADJHJ_RS05440 WP_220430952.1 1160053..1161867(+) (rcrQ) [[Clostridium] scindens strain MO32]
MPRRGPGHGPMPGEKAKDFKGTMKKLMGYMGKYKIALLFVVIFAIGSTIFNIVGPKILGKATTEIFTGLVGKISGGSGID
FTKIGRILATLLCLYLCSALFSFIQGYIMTGVSQKLTYRMRREISEKISRLPMNYFDKMTHGEILSRITNDVDTLSMSLN
QSATQVITSVTTIIGVLIMMLSISPLMTVIALLILPLSMGLISVIVKRSQKFFKSQQRYLGHVNGQVEEVYGGHSIVKAF
NKEKDVIAAFDRDNEILYQSAWKSQFLSGMMMPIMQFVGNLGYVAVVILGGYLAIKKTIEVGDIQSFIQYVRSFTQPIQQ
VAQVANMLQSTAAASERVFEFLEEPEEDQTVPDAVALEGLEGRVEFDHVHFGYNPDHIIINDFSAKVEPGQKIAIVGPTG
AGKTTMVKLLMRFYDVNSGAIKVDGHDIRDFNRSELRQMFGMVLQDTWLFKGSIEDNIRYGKLDATHEEVVEAAKAAHVH
RFVQTLPGGYRMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAMDNLMRGRTSFIIAHRLS
TIRDADLILVMKDGDIVEQGTHEELLARNGFYADLYNSQFERSA

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=900783 CLBADJHJ_RS05440 WP_220430952.1 1160053..1161867(+) (rcrQ) [[Clostridium] scindens strain MO32]
ATGCCAAGAAGAGGTCCGGGACATGGTCCGATGCCTGGAGAGAAGGCAAAGGACTTTAAAGGCACTATGAAAAAATTGAT
GGGCTATATGGGGAAATATAAGATTGCCCTGCTCTTTGTGGTCATATTTGCCATCGGCAGTACCATTTTCAATATCGTAG
GCCCTAAGATTCTTGGAAAGGCCACGACAGAAATATTTACCGGCCTGGTAGGCAAGATATCCGGGGGAAGCGGAATTGAT
TTCACAAAGATCGGAAGAATTCTGGCGACATTGCTCTGCCTGTACTTATGCAGCGCCTTGTTCTCGTTTATCCAGGGATA
CATCATGACGGGCGTATCCCAGAAACTGACCTACCGGATGAGAAGAGAGATCTCCGAGAAGATCAGCCGGCTGCCAATGA
ACTATTTTGATAAGATGACCCACGGAGAGATCCTGTCACGCATCACCAATGACGTGGATACCCTGAGCATGAGCTTGAAC
CAGAGCGCGACACAGGTAATCACCTCGGTGACGACGATCATCGGAGTGCTGATCATGATGCTCAGCATCAGCCCGCTGAT
GACGGTGATCGCCCTGTTGATCCTTCCGCTGTCCATGGGGCTGATCTCTGTGATCGTCAAGCGCTCCCAGAAGTTCTTCA
AAAGCCAGCAGAGGTACCTGGGCCATGTCAATGGGCAGGTGGAAGAAGTGTACGGCGGACATAGCATCGTAAAGGCATTC
AATAAGGAGAAAGACGTGATCGCGGCATTTGACCGGGACAATGAGATCCTCTACCAGTCTGCATGGAAGTCCCAGTTCCT
CTCAGGAATGATGATGCCTATCATGCAGTTTGTTGGAAATCTTGGCTATGTGGCTGTAGTCATCCTTGGTGGCTACCTCG
CGATCAAGAAGACGATAGAAGTAGGCGATATCCAGTCATTTATCCAATACGTAAGAAGTTTTACCCAGCCGATCCAGCAG
GTAGCGCAGGTGGCCAACATGCTTCAGTCCACGGCAGCAGCTTCCGAGCGCGTATTCGAGTTCCTGGAAGAGCCGGAAGA
AGACCAGACGGTGCCGGATGCAGTGGCTTTGGAAGGCCTGGAAGGGCGTGTGGAATTTGACCATGTGCATTTCGGATATA
ATCCGGATCATATCATTATCAATGATTTTAGCGCCAAGGTAGAGCCTGGGCAGAAGATTGCCATCGTCGGGCCTACCGGA
GCCGGCAAGACCACCATGGTCAAGCTGCTGATGCGGTTCTATGACGTCAACAGCGGCGCCATCAAGGTAGACGGCCATGA
TATCCGTGACTTTAACCGCAGCGAGCTGCGCCAGATGTTCGGCATGGTACTGCAGGATACCTGGCTGTTTAAGGGGAGCA
TTGAAGACAATATCCGCTATGGCAAGCTGGACGCTACCCATGAGGAGGTGGTCGAGGCTGCCAAGGCTGCCCATGTACAC
CGTTTTGTACAGACGCTGCCGGGAGGCTATCGAATGGAACTGAACGAAGAGGCAAGCAATGTTTCCCAGGGACAGAAGCA
GCTTCTGACTATTGCCAGGGCAATTCTGGCGGATCCGAAGATTCTGATCCTTGATGAGGCAACCAGTTCCGTAGATACCC
GTACGGAAGTCAGGATTCAGAAGGCGATGGATAATCTGATGCGTGGCAGGACCAGCTTCATTATTGCACACCGCCTCTCA
ACCATCCGCGACGCAGACCTGATCCTTGTCATGAAAGACGGAGATATCGTCGAGCAGGGTACCCATGAAGAACTGCTGGC
AAGAAACGGCTTCTATGCGGATCTTTATAACTCTCAGTTTGAAAGAAGCGCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-317)

ABC transporter (ABC_tran)

(381-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.775

96.192

0.488