Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RGF10_RS17985 Genome accession   NZ_CP137761
Coordinates   3525419..3526198 (-) Length   259 a.a.
NCBI ID   WP_318504651.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3520419..3531198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS17960 - 3520877..3521653 (-) 777 WP_318504610.1 isoprenyl transferase -
  RGF10_RS17965 frr 3521934..3522491 (-) 558 WP_318504616.1 ribosome recycling factor -
  RGF10_RS17970 pyrH 3522494..3523216 (-) 723 WP_318504630.1 UMP kinase -
  RGF10_RS17975 tsf 3523475..3524356 (-) 882 WP_318504638.1 translation elongation factor Ts -
  RGF10_RS17980 rpsB 3524503..3525201 (-) 699 WP_318504645.1 30S ribosomal protein S2 -
  RGF10_RS17985 codY 3525419..3526198 (-) 780 WP_318504651.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RGF10_RS17990 hslU 3526298..3527710 (-) 1413 WP_318504658.1 HslU--HslV peptidase ATPase subunit -
  RGF10_RS17995 hslV 3527731..3528273 (-) 543 WP_318504663.1 ATP-dependent protease subunit HslV -
  RGF10_RS18000 xerC 3528298..3529203 (-) 906 WP_318504678.1 tyrosine recombinase XerC -
  RGF10_RS18005 trmFO 3529265..3530569 (-) 1305 WP_318504683.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29017.34 Da        Isoelectric Point: 4.8283

>NTDB_id=900576 RGF10_RS17985 WP_318504651.1 3525419..3526198(-) (codY) [Bacillus sp. T3]
MELLTRTRTINAMLQRAAGKPVNFKEMAETLRNVIEANVFVVSRRGKLLGFAIKQSIENDRMKKMLEDRQFPEDYTKSLF
NIQETSSNIDIESEYTAFPVENKSLFNAGLTTIVPIIGGGERLGTLILSRLEEQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELEKLKSN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=900576 RGF10_RS17985 WP_318504651.1 3525419..3526198(-) (codY) [Bacillus sp. T3]
ATGGAGTTATTAACTAGAACAAGAACAATCAACGCAATGCTACAAAGAGCTGCAGGGAAACCTGTAAACTTCAAGGAAAT
GGCCGAAACATTACGAAATGTTATTGAAGCAAACGTATTTGTGGTTAGTCGCCGTGGTAAATTATTAGGTTTTGCTATTA
AGCAATCAATCGAGAATGATCGTATGAAAAAGATGCTTGAAGATCGTCAATTTCCTGAAGACTATACAAAAAGTCTTTTC
AATATTCAAGAAACTTCTTCAAATATTGATATTGAAAGTGAATATACAGCTTTTCCAGTTGAAAACAAGTCATTATTTAA
TGCTGGTTTAACAACAATCGTTCCGATTATCGGCGGTGGAGAGCGCTTAGGAACTTTAATCCTTTCACGCTTAGAAGAGC
AATTCCATGATGATGATTTAATCCTTGCAGAATATGGTGCAACAGTTGTTGGAATGGAAATTCTTCGTGAGAAAGCTGAA
GAGATTGAAGAAGAAGCTCGCAGCAAAGCAGTTGTTCAAATGGCAATTAGCTCACTATCTTATAGTGAATTAGAAGCAAT
TGAACATATTTTTGAAGAATTAAACGGAAATGAAGGCTTATTAGTAGCTTCTAAAATTGCAGATCGTGTTGGTATTACAC
GTTCCGTTATTGTTAATGCACTTCGTAAACTAGAAAGTGCTGGTGTCATTGAATCTCGTTCACTAGGAATGAAAGGAACT
TACATAAAAGTTCTTAATGACAAATTTCTTGTTGAGCTTGAAAAATTAAAATCTAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

88.031

100

0.88
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.368

95.367

0.452