Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   R2H34_RS09610 Genome accession   NZ_CP137746
Coordinates   1960628..1961356 (-) Length   242 a.a.
NCBI ID   WP_227545354.1    Uniprot ID   -
Organism   Acinetobacter sp. 16     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1955628..1966356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS09580 - 1956079..1956519 (-) 441 WP_075696895.1 SRPBCC family protein -
  R2H34_RS09585 tadA 1956586..1957089 (-) 504 WP_282896510.1 tRNA adenosine(34) deaminase TadA -
  R2H34_RS09590 - 1957096..1958220 (-) 1125 WP_171053792.1 enoyl-CoA hydratase/isomerase family protein -
  R2H34_RS09595 ung 1958217..1958930 (-) 714 WP_004911491.1 uracil-DNA glycosylase -
  R2H34_RS09600 - 1958969..1959565 (-) 597 WP_004954093.1 6-pyruvoyl trahydropterin synthase family protein -
  R2H34_RS09605 gspK 1959672..1960631 (-) 960 WP_282896509.1 type II secretion system minor pseudopilin GspK -
  R2H34_RS09610 xcpW 1960628..1961356 (-) 729 WP_227545354.1 type II secretion system minor pseudopilin GspJ Machinery gene
  R2H34_RS09615 xcpV 1961353..1961706 (-) 354 WP_042106585.1 type II secretion system protein Machinery gene
  R2H34_RS09620 - 1961840..1962388 (-) 549 WP_282896508.1 Tfp pilus assembly protein FimT/FimU -
  R2H34_RS09625 - 1962401..1963009 (-) 609 WP_020899852.1 TetR/AcrR family transcriptional regulator -
  R2H34_RS09630 - 1963048..1963821 (-) 774 WP_005402540.1 TatD family hydrolase -
  R2H34_RS09635 - 1963844..1964188 (-) 345 WP_005402539.1 PilZ domain-containing protein -
  R2H34_RS09640 - 1964415..1965401 (-) 987 WP_282896507.1 DNA polymerase III subunit delta' -
  R2H34_RS09645 kdsB 1965403..1966164 (-) 762 WP_039047964.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27945.27 Da        Isoelectric Point: 9.0888

>NTDB_id=900505 R2H34_RS09610 WP_227545354.1 1960628..1961356(-) (xcpW) [Acinetobacter sp. 16]
MKIKNVVMRLGFRFNVVSECQQSSTKSYLPKKIKSNLGFTLVELLVAIAIFAVLSMLGWKVFDYLIKVKDRNAEHETHLF
ELQDAYQQFLKDSMQIIPLTANDGRQLQAAMVLNDRSFSFSKAGVSDPLKQDLSPYERIEYRYDAQQKKVYRLKYTNLNI
PNRVQPVSSTLLENVDQFRILILNPQEISQWPENINDPNNVNELKKLPLGFKVQLTIAGSDYEWIYSLLNANQLLVNLET
PP

Nucleotide


Download         Length: 729 bp        

>NTDB_id=900505 R2H34_RS09610 WP_227545354.1 1960628..1961356(-) (xcpW) [Acinetobacter sp. 16]
ATGAAAATCAAGAATGTTGTAATGAGGTTGGGTTTCAGATTTAATGTTGTCTCAGAATGTCAGCAAAGTTCAACTAAGTC
TTATTTACCTAAAAAAATTAAGAGTAATTTAGGTTTTACTTTAGTTGAGTTGCTTGTTGCGATTGCGATATTTGCAGTGC
TTTCAATGTTGGGGTGGAAAGTTTTTGATTATCTCATCAAAGTGAAAGATAGAAATGCAGAACATGAAACACACTTATTT
GAATTACAGGATGCTTATCAGCAATTTTTAAAAGATAGCATGCAGATAATTCCATTGACTGCAAATGATGGGCGACAATT
ACAAGCAGCTATGGTTTTGAATGATCGAAGTTTTAGTTTTAGTAAGGCTGGGGTATCTGATCCATTGAAGCAAGATCTTT
CACCATATGAGCGAATAGAATACAGATATGATGCGCAACAAAAAAAAGTTTACCGTTTGAAATATACAAATTTAAATATT
CCAAATCGTGTGCAACCAGTATCAAGCACTTTACTTGAAAATGTAGATCAATTTAGAATTTTGATTTTAAATCCACAAGA
AATTAGCCAATGGCCTGAAAATATTAATGATCCAAATAATGTAAATGAATTAAAGAAGTTACCATTAGGTTTTAAAGTTC
AATTGACGATTGCTGGTTCAGATTATGAGTGGATTTATAGTTTATTAAATGCCAATCAGTTATTGGTCAATCTGGAAACT
CCACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(34-57)

Type II secretion system (T2SS), protein J (T2SSJ)

(91-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

71.728

78.926

0.566