Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABG803_RS02505 Genome accession   NZ_CP156930
Coordinates   548161..548886 (-) Length   241 a.a.
NCBI ID   WP_003117927.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2024CK-00356     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 543161..553886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG803_RS02480 (ABG803_02480) - 543633..544148 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  ABG803_RS02485 (ABG803_02485) rarD 544838..545734 (-) 897 WP_003103301.1 EamA family transporter RarD -
  ABG803_RS02490 (ABG803_02490) - 545937..546911 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  ABG803_RS02495 (ABG803_02495) - 546973..547731 (-) 759 Protein_497 TOBE domain-containing protein -
  ABG803_RS02500 (ABG803_02500) - 547799..548119 (-) 321 WP_003117926.1 YfiM family lipoprotein -
  ABG803_RS02505 (ABG803_02505) comF 548161..548886 (-) 726 WP_003117927.1 ComF family protein Machinery gene
  ABG803_RS02510 (ABG803_02510) - 549025..549318 (-) 294 WP_003113255.1 hypothetical protein -
  ABG803_RS02515 (ABG803_02515) - 549372..550298 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  ABG803_RS02520 (ABG803_02520) - 550416..551174 (+) 759 WP_347914811.1 5-oxoprolinase subunit PxpA -
  ABG803_RS02525 (ABG803_02525) - 551251..551499 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  ABG803_RS02530 (ABG803_02530) - 551510..552886 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  ABG803_RS02535 (ABG803_02535) - 552888..553766 (+) 879 WP_003117928.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27062.56 Da        Isoelectric Point: 11.2212

>NTDB_id=900254 ABG803_RS02505 WP_003117927.1 548161..548886(-) (comF) [Pseudomonas aeruginosa strain 2024CK-00356]
MSFPLRPLTRWLLPPPACLLCAARSDQPARPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=900254 ABG803_RS02505 WP_003117927.1 548161..548886(-) (comF) [Pseudomonas aeruginosa strain 2024CK-00356]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGGCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.017

100

0.382