Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LDO91_RS00910 Genome accession   NZ_AP025149
Coordinates   198344..199054 (-) Length   236 a.a.
NCBI ID   WP_126606120.1    Uniprot ID   -
Organism   Vibrio penaeicida strain IFO 15642     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 193344..204054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO91_RS00885 - 193565..194323 (+) 759 WP_126606119.1 type II secretion system protein N -
  LDO91_RS00890 nudE 194554..195108 (+) 555 WP_101114524.1 ADP compounds hydrolase NudE -
  LDO91_RS00895 cysQ 195120..195941 (+) 822 WP_101114523.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LDO91_RS00900 - 196220..197554 (+) 1335 WP_224055297.1 serine protease -
  LDO91_RS00905 nfuA 197666..198253 (-) 588 WP_101114522.1 Fe-S biogenesis protein NfuA -
  LDO91_RS00910 comF 198344..199054 (-) 711 WP_126606120.1 ComF family protein Machinery gene
  LDO91_RS00915 bioH 199134..199898 (+) 765 WP_126606121.1 pimeloyl-ACP methyl ester esterase BioH -
  LDO91_RS00920 - 200040..200504 (+) 465 WP_126606122.1 ATP-dependent Lon protease -
  LDO91_RS00925 plsB 200585..203008 (-) 2424 WP_126606130.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  LDO91_RS00930 lexA 203325..203939 (+) 615 WP_104400174.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27314.47 Da        Isoelectric Point: 8.5566

>NTDB_id=90025 LDO91_RS00910 WP_126606120.1 198344..199054(-) (comF) [Vibrio penaeicida strain IFO 15642]
MAFSHWLKIKIHHHFKLQCPSCGLNIEESTPKTRWCGACLEDLREKHRCLQCGLPTLNTVEQCGQCLSAPPPWRRLYCVG
DYQPPLSNYIHSFKHQHQFWLSGDLTYLLAEQISQPAEIITSVPLHWRRQLWRGYNQSDYLAKSLCQHLGVTERFDNQIF
RRIKSTRAQQGLDRKARLLNLRNAFTLDSSRVAKHMAIVDDVVTTGSTIRQLCQLLLDVGVERVDIYCVCRTPDPT

Nucleotide


Download         Length: 711 bp        

>NTDB_id=90025 LDO91_RS00910 WP_126606120.1 198344..199054(-) (comF) [Vibrio penaeicida strain IFO 15642]
ATGGCTTTTTCCCACTGGCTGAAAATTAAAATTCACCACCATTTTAAACTTCAATGCCCTTCATGTGGTCTGAACATTGA
GGAAAGTACACCAAAAACAAGATGGTGTGGCGCTTGTTTAGAGGATCTGAGAGAAAAGCACCGATGTTTACAATGTGGGC
TACCCACCCTCAATACGGTTGAGCAGTGCGGTCAATGCCTCTCAGCACCTCCACCATGGCGGCGCTTATATTGTGTGGGA
GATTATCAGCCCCCATTATCGAACTATATTCACAGCTTCAAACATCAACATCAATTCTGGTTGTCTGGAGATCTCACCTA
TCTCCTTGCAGAGCAAATTTCTCAGCCTGCTGAGATTATTACATCAGTTCCACTCCATTGGCGTCGGCAACTTTGGCGAG
GCTACAATCAAAGCGATTACCTAGCGAAATCATTGTGCCAGCACCTTGGTGTCACCGAGCGCTTTGACAATCAAATATTC
AGACGCATAAAGTCCACTCGCGCACAACAGGGGCTCGATCGTAAAGCCCGCCTTCTCAACCTAAGAAATGCATTCACTCT
CGATTCTTCTCGTGTGGCAAAACACATGGCGATTGTTGATGACGTCGTGACGACGGGCAGCACTATCCGACAATTATGCC
AATTACTACTTGATGTTGGGGTAGAAAGGGTCGATATTTACTGCGTATGCCGAACCCCTGATCCGACTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(182-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.361

98.729

0.517
  comF Vibrio campbellii strain DS40M4

49.372

100

0.5

Multiple sequence alignment