Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LDO90_RS00920 Genome accession   NZ_AP025147
Coordinates   199786..200496 (-) Length   236 a.a.
NCBI ID   WP_126606120.1    Uniprot ID   -
Organism   Vibrio penaeicida strain IFO 15641     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 194786..205496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO90_RS00895 - 195007..195765 (+) 759 WP_126606119.1 type II secretion system protein N -
  LDO90_RS00900 nudE 195996..196550 (+) 555 WP_101114524.1 ADP compounds hydrolase NudE -
  LDO90_RS00905 cysQ 196562..197383 (+) 822 WP_101114523.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LDO90_RS00910 - 197680..198996 (+) 1317 WP_224067522.1 serine protease -
  LDO90_RS00915 nfuA 199108..199695 (-) 588 WP_101114522.1 Fe-S biogenesis protein NfuA -
  LDO90_RS00920 comF 199786..200496 (-) 711 WP_126606120.1 ComF family protein Machinery gene
  LDO90_RS00925 bioH 200576..201340 (+) 765 WP_126606121.1 pimeloyl-ACP methyl ester esterase BioH -
  LDO90_RS00930 - 201482..201946 (+) 465 WP_126606122.1 ATP-dependent Lon protease -
  LDO90_RS00935 plsB 202027..204450 (-) 2424 WP_126606130.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  LDO90_RS00940 lexA 204767..205381 (+) 615 WP_104400174.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27314.47 Da        Isoelectric Point: 8.5566

>NTDB_id=89982 LDO90_RS00920 WP_126606120.1 199786..200496(-) (comF) [Vibrio penaeicida strain IFO 15641]
MAFSHWLKIKIHHHFKLQCPSCGLNIEESTPKTRWCGACLEDLREKHRCLQCGLPTLNTVEQCGQCLSAPPPWRRLYCVG
DYQPPLSNYIHSFKHQHQFWLSGDLTYLLAEQISQPAEIITSVPLHWRRQLWRGYNQSDYLAKSLCQHLGVTERFDNQIF
RRIKSTRAQQGLDRKARLLNLRNAFTLDSSRVAKHMAIVDDVVTTGSTIRQLCQLLLDVGVERVDIYCVCRTPDPT

Nucleotide


Download         Length: 711 bp        

>NTDB_id=89982 LDO90_RS00920 WP_126606120.1 199786..200496(-) (comF) [Vibrio penaeicida strain IFO 15641]
ATGGCTTTTTCCCACTGGCTGAAAATTAAAATTCACCACCATTTTAAACTTCAATGCCCTTCATGTGGTCTGAACATTGA
GGAAAGTACACCAAAAACAAGATGGTGTGGCGCTTGTTTAGAGGATCTGAGAGAAAAGCACCGATGTTTACAATGTGGGC
TACCCACCCTCAATACGGTTGAGCAGTGCGGTCAATGCCTCTCAGCACCTCCACCATGGCGGCGCTTATATTGTGTGGGA
GATTATCAGCCCCCATTATCGAACTATATTCACAGCTTCAAACATCAACATCAATTCTGGTTGTCTGGAGATCTCACCTA
TCTCCTTGCAGAGCAAATTTCTCAGCCTGCTGAGATTATTACATCAGTTCCACTCCATTGGCGTCGGCAACTTTGGCGAG
GCTACAATCAAAGCGATTACCTAGCGAAATCATTGTGCCAGCACCTTGGTGTCACCGAGCGCTTTGACAATCAAATATTC
AGACGCATAAAGTCCACTCGCGCACAACAGGGGCTCGATCGTAAAGCCCGCCTTCTCAACCTAAGAAATGCATTCACTCT
CGATTCTTCTCGTGTGGCAAAACACATGGCGATTGTTGATGACGTCGTGACGACGGGCAGCACTATCCGACAATTATGCC
AATTACTACTTGATGTTGGGGTAGAAAGGGTCGATATTTACTGCGTATGCCGAACCCCTGATCCGACTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(182-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.361

98.729

0.517
  comF Vibrio campbellii strain DS40M4

49.372

100

0.5

Multiple sequence alignment