Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   R7892_RS07975 Genome accession   NZ_CP137688
Coordinates   1653894..1654730 (-) Length   278 a.a.
NCBI ID   WP_112195640.1    Uniprot ID   -
Organism   Ligilactobacillus murinus strain KD6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1648894..1659730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R7892_RS07945 (R7892_07945) - 1649060..1649665 (-) 606 WP_289190821.1 response regulator transcription factor -
  R7892_RS07950 (R7892_07950) - 1649665..1650786 (-) 1122 WP_289190820.1 sensor histidine kinase -
  R7892_RS07955 (R7892_07955) - 1650789..1651511 (-) 723 WP_318239253.1 ABC transporter permease -
  R7892_RS07960 (R7892_07960) - 1651489..1652385 (-) 897 WP_289190818.1 ABC transporter ATP-binding protein -
  R7892_RS07965 (R7892_07965) - 1652514..1653389 (-) 876 WP_318239254.1 type II CAAX endopeptidase family protein -
  R7892_RS07970 (R7892_07970) - 1653583..1653894 (-) 312 WP_289190816.1 MazG-like protein -
  R7892_RS07975 (R7892_07975) endA 1653894..1654730 (-) 837 WP_112195640.1 DNA/RNA non-specific endonuclease Machinery gene
  R7892_RS07980 (R7892_07980) asnA 1654790..1655797 (-) 1008 WP_289190815.1 aspartate--ammonia ligase -
  R7892_RS07985 (R7892_07985) - 1655986..1656633 (+) 648 WP_318239255.1 nitroreductase -
  R7892_RS07990 (R7892_07990) - 1656690..1657115 (-) 426 WP_318239256.1 N-acetyltransferase -
  R7892_RS07995 (R7892_07995) - 1657183..1657569 (+) 387 WP_278876281.1 iron chaperone -
  R7892_RS08000 (R7892_08000) - 1658364..1658630 (-) 267 WP_005922582.1 hypothetical protein -

Sequence

Protein


Download         Length: 278 a.a.        Molecular weight: 30364.01 Da        Isoelectric Point: 10.5129

>NTDB_id=899795 R7892_RS07975 WP_112195640.1 1653894..1654730(-) (endA) [Ligilactobacillus murinus strain KD6]
MKFKKILTGFAAALMLSGAIGAPVTAKATTHYGGWRTHQKNSSSGSGELKKSTPSQQLAQTVLTPDVVKQLGGEQNLKWN
NSGAFIVNNNKTDLKAKVSSAPYATNEVDSLKRPTVANALLNRTTRQYKNRHQTNNGSTKWKPQGFKQLTNLSGAYNHAY
DRGHLLGYALVGNIRGFDASESNPKNIATQTAWANEANAKYSTGQNYYESLVRKALDRNKTVRYRVTNVYSGNNLVPSGA
HLEAKASDGSLEYNVFIPNVQKGLKIDYATGHAIKENN

Nucleotide


Download         Length: 837 bp        

>NTDB_id=899795 R7892_RS07975 WP_112195640.1 1653894..1654730(-) (endA) [Ligilactobacillus murinus strain KD6]
ATGAAGTTCAAAAAAATACTGACCGGATTTGCGGCAGCTTTGATGCTCAGTGGTGCGATCGGGGCACCGGTAACAGCTAA
AGCAACGACGCACTATGGTGGCTGGCGCACACATCAAAAAAATAGTTCGAGTGGCTCTGGTGAATTAAAAAAGAGCACTC
CATCACAACAATTAGCTCAAACGGTTTTGACACCGGATGTTGTTAAACAATTGGGCGGTGAGCAAAATCTCAAATGGAAC
AACAGTGGGGCTTTTATCGTTAATAACAACAAGACAGATCTAAAAGCTAAGGTTTCTAGTGCTCCTTATGCAACAAATGA
AGTCGATAGCTTAAAACGTCCGACGGTAGCCAATGCCCTTTTGAATAGGACAACACGGCAATACAAGAATCGCCACCAAA
CTAATAATGGTTCGACTAAATGGAAACCACAAGGCTTTAAGCAACTCACTAACTTAAGTGGCGCCTACAACCATGCTTAT
GATCGCGGACACTTACTAGGGTATGCTTTAGTTGGAAATATTCGTGGTTTTGATGCTAGTGAGAGCAATCCCAAAAATAT
TGCGACTCAGACAGCTTGGGCTAATGAAGCTAATGCAAAATATTCAACAGGTCAAAACTATTACGAAAGTCTTGTTCGAA
AAGCCTTAGATCGTAATAAGACTGTCCGTTATCGTGTGACAAATGTCTATAGCGGTAATAATTTAGTACCATCAGGAGCT
CATTTAGAAGCTAAAGCAAGTGATGGTTCGTTAGAGTATAATGTTTTTATCCCTAATGTTCAAAAGGGATTAAAGATCGA
TTATGCTACTGGTCATGCGATAAAGGAGAACAACTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(82-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.471

80.216

0.525
  endA Streptococcus pneumoniae D39

65.471

80.216

0.525
  endA Streptococcus pneumoniae R6

65.471

80.216

0.525
  endA Streptococcus pneumoniae TIGR4

65.471

80.216

0.525