Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   R6Y88_RS02250 Genome accession   NZ_CP137687
Coordinates   497423..498202 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain YT-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 492423..503202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS02220 fliH 492441..493193 (-) 753 WP_015383659.1 flagellar assembly protein FliH -
  R6Y88_RS02225 fliG 493186..494202 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  R6Y88_RS02230 fliF 494215..495825 (-) 1611 WP_015483223.1 flagellar basal-body MS-ring/collar protein FliF -
  R6Y88_RS02235 fliE 495871..496191 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  R6Y88_RS02240 flgC 496202..496654 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  R6Y88_RS02245 flgB 496654..497043 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  R6Y88_RS02250 codY 497423..498202 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  R6Y88_RS02255 hslU 498242..499645 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  R6Y88_RS02260 clpQ 499662..500207 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  R6Y88_RS02265 xerC 500220..501134 (-) 915 WP_015383656.1 tyrosine recombinase XerC -
  R6Y88_RS02270 trmFO 501202..502509 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=899697 R6Y88_RS02250 WP_003220850.1 497423..498202(-) (codY) [Bacillus subtilis strain YT-4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=899697 R6Y88_RS02250 WP_003220850.1 497423..498202(-) (codY) [Bacillus subtilis strain YT-4]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467